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---
toc: true
---
<br />
## Welcome {.unnumbered}
::: {.callout-important}
## Update your system {.unnumbered}
Having an up-to-date environment is a **prerequisite** for all FRB-CESAB training courses. Please
**update your whole system** (operating system, software and {{< fa brands r-project >}} packages) **before starting the course**!
:::
This guide will help you install, set up and update a working environment for data science in {{< fa brands r-project >}} (and others) required for FRB-CESAB training courses.
| | Course | Tutorial |
|:----------------------------------------------------------:|:--------------------------------------------------|:-------------------------------------------:|
| {width=40%} | Reproducible research in computational ecology | [Link](chapters/reproducible-research.html) |
| {width=40%} | Theory-driven analysis of ecological data | [Link](chapters/theoretical-models.html) |
| {width=40%} | Systematic reviews & meta-analyses | Link |
| {width=40%} | Analyzing ecological networks | [Link](chapters/ecological-networks.html) |
| {width=40%} | Biodiversity data management | Link |
| {width=40%} | Artificial intelligence for ecologists: A toolkit | Link |
: **Table 1.** List of FRB-CESAB training courses {tbl-colwidths="[10,70,20]"}
<br />
<!--
**NB.** Not all software is required for all courses: please follow the tutorial that is tailored to your course.
| Course | R | RStudio | Positron | Quarto | Git | GitHub | Docker | OpenRefine | Stan |
|:---------------------------------------------------:|:----------------:|:----------------:|:----------------:|:----------------:|:----------------:|:----------------:|:----------------:|:----------------:|:----------------:|
| {width=25%} | {{< fa square-check >}} | {{< fa square-xmark >}} | {{< fa square-check >}} | {{< fa square-check >}} | {{< fa square-check >}} | {{< fa square-check >}} | {{< fa square-minus >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} |
| {width=25%} | {{< fa square-check >}} | {{< fa square-minus >}} | {{< fa square-minus >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-check >}} |
| {width=25%} | {{< fa square-check >}} | {{< fa square-minus >}} | {{< fa square-minus >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} |
| {width=25%} | {{< fa square-check >}} | {{< fa square-minus >}} | {{< fa square-minus >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} |
| {width=25%} | {{< fa square-check >}} | {{< fa square-minus >}} | {{< fa square-minus >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-check >}} | {{< fa square-xmark >}} |
| {width=25%} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} | {{< fa square-xmark >}} |
: **Table 2.** List of software for each FRB-CESAB training courses
{{< fa square-check >}} _software required_ {{< fa square-minus >}} _optional_ {{< fa square-xmark >}} _not required_
-->
## Citation {.unnumbered}
> Casajus N (2025) Setting up a working environment for data science with R. URL: <https://frbcesab.github.io/rsetup/>
## Contributions {.unnumbered}
If you see mistakes or want to suggest changes, please [create an issue](https://github.com/frbcesab/rsetup/issues/new) on the source repository.
## Reuse {.unnumbered}
Text and figures are licensed under Creative Commons Attribution [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/), unless otherwise noted.