updated with better toc

Author: sarthakpati

docs/itcr_connectivity.md

@@ -1,51 +1,52 @@
+
 This section includes a reference of all ongoing and existing connections between FeTS and other projects funded under the [Informatics Technology for Cancer Research (ITCR)](https://itcr.cancer.gov/) program.
 
 A connectivity map featuring all ITCR projects can be found [here](https://www.ndexbio.org/#/network/04c0a7e8-af92-11e7-94d3-0ac135e8bacf).
 
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-* [Existing Connections](#ExistingConnections)
-	* [DCMTK](#DCMTK)
-	* [DCMQI](#DCMQI)
-	* [CaPTk](#CaPTk)
-	* [Synapse PACS](#SynapsePACS)
-	* [TCIA and IDC](#TCIAandIDC)
-* [Ongoing Development](#OngoingDevelopment)
-	* [XNAT](#XNAT)
-	* [FLAIM](#FLAIM)
-	* [PRISM](#PRISM)
+- [<a name='ExistingConnections'></a>Existing Connections](#existing-connections)
+	- [<a name='DCMTK'></a>DCMTK](#dcmtk)
+	- [<a name='DCMQI'></a>DCMQI](#dcmqi)
+	- [<a name='CaPTk'></a>CaPTk](#captk)
+	- [<a name='SynapsePACS'></a>Synapse PACS](#synapse-pacs)
+	- [<a name='TCIAandIDC'></a>TCIA and IDC](#tcia-and-idc)
+- [<a name='OngoingDevelopment'></a>Ongoing Development](#ongoing-development)
+	- [<a name='XNAT'></a>XNAT](#xnat)
+	- [<a name='FLAIM'></a>FLAIM](#flaim)
+	- [<a name='PRISM'></a>PRISM](#prism)
 
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-##  1. <a name='ExistingConnections'></a>Existing Connections
+## <a name='ExistingConnections'></a>Existing Connections
 
-###  1.1. <a name='DCMTK'></a>DCMTK
+### <a name='DCMTK'></a>DCMTK
 FeTS uses [DCMTK - DICOM ToolKit (DCMTK)](https://dicom.offis.de/dcmtk.php.en) for DICOM file handling. 
 
-###  1.2. <a name='DCMQI'></a>DCMQI
+### <a name='DCMQI'></a>DCMQI
 FeTS leverages [DICOM for Quantitative Imaging (DCMQI)](http://qiicr.org/dcmqi-guide/tutorials/intro.html) for generating DICOM-Seg files from NIfTI files. 
 
-###  1.3. <a name='CaPTk'></a>CaPTk
+### <a name='CaPTk'></a>CaPTk
 FeTS leverages the [Cancer Imaging Phenomics Toolkit (CaPTk)](https://www.med.upenn.edu/cbica/captk) for integrating CaPTk's current functionality into FeTS. 
 
-###  1.4. <a name='SynapsePACS'></a>Synapse PACS
+### <a name='SynapsePACS'></a>Synapse PACS
 FeTS' performance evaluation metrics are used by [Synapse PACS](https://www.synapse.org/).  
 
-###  1.5. <a name='TCIAandIDC'></a>TCIA and IDC
+### <a name='TCIAandIDC'></a>TCIA and IDC
 Enriching [The Cancer Imaging Archive (TCIA)](https://www.cancerimagingarchive.net/) and [Imaging Data Commons (IDC)](https://datacommons.cancer.gov/repository/imaging-data-commons) data collections with segmentations and radiomic features. Robustness analysis on radiomic features on TCIA data has also been posted back to TCIA.
 
-##  2. <a name='OngoingDevelopment'></a>Ongoing Development
+## <a name='OngoingDevelopment'></a>Ongoing Development
 
-###  2.1. <a name='XNAT'></a>XNAT
+### <a name='XNAT'></a>XNAT
 Use FeTS' federated learning functionality for data discovery through [XNAT](https://xnat.org) features through its feature extraction functionality. 
 
-###  2.2. <a name='FLAIM'></a>FLAIM
+### <a name='FLAIM'></a>FLAIM
 Interoperability and privacy preservation algorithmic comparison. 
 
-###  2.3. <a name='PRISM'></a>PRISM
+### <a name='PRISM'></a>PRISM
 Federated learning for segmentation of PRISM data.
 
 Contact [contact [at] fets.ai](mailto:contact@fets.ai) with any questions.