AnyVLM/compose.dev.yaml at main · GenomicMedLab/AnyVLM · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
services:
  anyvlm:
    build:
      context: .
    depends_on:
      anyvlm_db:
        required: true
        condition: service_started
    volumes:
      - ./src:/app/src
    command:
      - uvicorn
      - anyvlm.main:app
      - --host=0.0.0.0
      - --port=8000
      - --reload
      - --reload-dir=/app/src
      - --app-dir=/app/src
    environment:
      - ANYVLM_STORAGE_URI=postgresql://anyvlm:anyvlm-pw@anyvlm_db:5432/anyvlm
      - HANDOVER_TYPE_ID=CUSTOM:GREGoR-NCH
      - HANDOVER_TYPE_LABEL=GREGoR AnyVLM Reference
      - BEACON_HANDOVER_URL=https://variants.gregorconsortium.org/
      - BEACON_NODE_ID=org.anyvlm.gregor
      - PYTHONPATH=/app/src

    ports:
      - 127.0.0.1:8080:8000

  anyvlm_db:
    image: postgres:17
    volumes:
      - anyvlm_vol:/var/lib/postgresql/data
    ports:
      - 127.0.0.1:5435:5432
    environment:
      - POSTGRES_DB=anyvlm
      - POSTGRES_USER=anyvlm
      - POSTGRES_PASSWORD=anyvlm-pw

volumes:
  anyvlm_vol:
    external: true