Skip to content

Commit 011ec4d

Browse files
committed
update links
1 parent 8394d0a commit 011ec4d

7 files changed

Lines changed: 43 additions & 43 deletions

File tree

GUI/CellPose3.html

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -502,11 +502,11 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
502502
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
503503
<section id="to-install">
504504
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
505-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellpose/cellpose3.sh<span class="w"> </span>-i<span class="w"> </span>
505+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellpose/cellposesam.sh<span class="w"> </span>-i<span class="w"> </span>
506506
</pre></div>
507507
</div>
508508
<p>or</p>
509-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellpose/cellpose3.sh<span class="w"> </span>--install
509+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellpose/cellposesam.sh<span class="w"> </span>--install
510510
</pre></div>
511511
</div>
512512
<div class="admonition tip">
@@ -516,21 +516,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
516516
</section>
517517
<section id="to-uninstall">
518518
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
519-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellpose/cellpose3.sh<span class="w"> </span>-u
519+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellpose/cellposesam.sh<span class="w"> </span>-u
520520
</pre></div>
521521
</div>
522522
<p>or</p>
523-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellpose/cellpose3.sh<span class="w"> </span>--uninstall
523+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellpose/cellposesam.sh<span class="w"> </span>--uninstall
524524
</pre></div>
525525
</div>
526526
</section>
527527
<section id="for-help">
528528
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
529-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellpose/cellpose3.sh<span class="w"> </span>-h
529+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellpose/cellposesam.sh<span class="w"> </span>-h
530530
</pre></div>
531531
</div>
532532
<p>or</p>
533-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellpose/cellpose3.sh<span class="w"> </span>--help
533+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellpose/cellposesam.sh<span class="w"> </span>--help
534534
</pre></div>
535535
</div>
536536
</section>

GUI/CellProfiler.html

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -502,11 +502,11 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
502502
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
503503
<section id="to-install">
504504
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
505-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellprofiler/cellprofiler.sh<span class="w"> </span>-i<span class="w"> </span>
505+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellprofiler/cellprofiler.sh<span class="w"> </span>-i<span class="w"> </span>
506506
</pre></div>
507507
</div>
508508
<p>or</p>
509-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellprofiler/cellprofiler.sh<span class="w"> </span>--install
509+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellprofiler/cellprofiler.sh<span class="w"> </span>--install
510510
</pre></div>
511511
</div>
512512
<div class="admonition tip">
@@ -516,21 +516,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
516516
</section>
517517
<section id="to-uninstall">
518518
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
519-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellprofiler/cellprofiler.sh<span class="w"> </span>-u
519+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellprofiler/cellprofiler.sh<span class="w"> </span>-u
520520
</pre></div>
521521
</div>
522522
<p>or</p>
523-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellprofiler/cellprofiler.sh<span class="w"> </span>--uninstall
523+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellprofiler/cellprofiler.sh<span class="w"> </span>--uninstall
524524
</pre></div>
525525
</div>
526526
</section>
527527
<section id="for-help">
528528
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
529-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellprofiler/cellprofiler.sh<span class="w"> </span>-h
529+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellprofiler/cellprofiler.sh<span class="w"> </span>-h
530530
</pre></div>
531531
</div>
532532
<p>or</p>
533-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/cellprofiler/cellprofiler.sh<span class="w"> </span>--help
533+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/cellprofiler/cellprofiler.sh<span class="w"> </span>--help
534534
</pre></div>
535535
</div>
536536
</section>

GUI/Fiji-ImageJ.html

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -501,11 +501,11 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
501501
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
502502
<section id="to-install">
503503
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
504-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/fiji-imagej/fiji-imagej.sh<span class="w"> </span>-i
504+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/fiji-imagej/fiji-imagej.sh<span class="w"> </span>-i
505505
</pre></div>
506506
</div>
507507
<p>or</p>
508-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/fiji-imagej/fiji-imagej.sh<span class="w"> </span>--install
508+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/fiji-imagej/fiji-imagej.sh<span class="w"> </span>--install
509509
</pre></div>
510510
</div>
511511
<div class="admonition tip">
@@ -515,21 +515,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
515515
</section>
516516
<section id="to-uninstall">
517517
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
518-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/fiji-imagej/fiji-imagej.sh<span class="w"> </span>-u
518+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/fiji-imagej/fiji-imagej.sh<span class="w"> </span>-u
519519
</pre></div>
520520
</div>
521521
<p>or</p>
522-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/fiji-imagej/fiji-imagej.sh<span class="w"> </span>--uninstall
522+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/fiji-imagej/fiji-imagej.sh<span class="w"> </span>--uninstall
523523
</pre></div>
524524
</div>
525525
</section>
526526
<section id="for-help">
527527
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
528-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/fiji-imagej/fiji-imagej.sh<span class="w"> </span>-h
528+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/fiji-imagej/fiji-imagej.sh<span class="w"> </span>-h
529529
</pre></div>
530530
</div>
531531
<p>or</p>
532-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/fiji-imagej/fiji-imagej.sh<span class="w"> </span>--help
532+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/fiji-imagej/fiji-imagej.sh<span class="w"> </span>--help
533533
</pre></div>
534534
</div>
535535
</section>

GUI/Ilastik.html

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -503,11 +503,11 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
503503
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
504504
<section id="to-install">
505505
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
506-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/ilastik/ilastik-1.4.0.sh<span class="w"> </span>-i
506+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/ilastik/ilastik-1.4.0.sh<span class="w"> </span>-i
507507
</pre></div>
508508
</div>
509509
<p>or</p>
510-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/ilastik/ilastik-1.4.0.sh<span class="w"> </span>--install
510+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/ilastik/ilastik-1.4.0.sh<span class="w"> </span>--install
511511
</pre></div>
512512
</div>
513513
<div class="admonition tip">
@@ -517,21 +517,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
517517
</section>
518518
<section id="to-uninstall">
519519
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
520-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/ilastik/ilastik-1.4.0.sh<span class="w"> </span>-u
520+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/ilastik/ilastik-1.4.0.sh<span class="w"> </span>-u
521521
</pre></div>
522522
</div>
523523
<p>or</p>
524-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/ilastik/ilastik-1.4.0.sh<span class="w"> </span>--uninstall
524+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/ilastik/ilastik-1.4.0.sh<span class="w"> </span>--uninstall
525525
</pre></div>
526526
</div>
527527
</section>
528528
<section id="for-help">
529529
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
530-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/ilastik/ilastik-1.4.0.sh<span class="w"> </span>-h
530+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/ilastik/ilastik-1.4.0.sh<span class="w"> </span>-h
531531
</pre></div>
532532
</div>
533533
<p>or</p>
534-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/ilastik/ilastik-1.4.0.sh<span class="w"> </span>--help
534+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/ilastik/ilastik-1.4.0.sh<span class="w"> </span>--help
535535
</pre></div>
536536
</div>
537537
</section>

GUI/Napari.html

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -498,11 +498,11 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
498498
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
499499
<section id="to-install">
500500
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
501-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/napari/napari.sh<span class="w"> </span>-i
501+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/napari/napari.sh<span class="w"> </span>-i
502502
</pre></div>
503503
</div>
504504
<p>or</p>
505-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/napari/napari.sh<span class="w"> </span>--install
505+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/napari/napari.sh<span class="w"> </span>--install
506506
</pre></div>
507507
</div>
508508
<div class="admonition tip">
@@ -512,21 +512,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
512512
</section>
513513
<section id="to-uninstall">
514514
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
515-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/napari/napari.sh<span class="w"> </span>-u
515+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/napari/napari.sh<span class="w"> </span>-u
516516
</pre></div>
517517
</div>
518518
<p>or</p>
519-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/napari/napari.sh<span class="w"> </span>--uninstall
519+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/napari/napari.sh<span class="w"> </span>--uninstall
520520
</pre></div>
521521
</div>
522522
</section>
523523
<section id="for-help">
524524
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
525-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/napari/napari.sh<span class="w"> </span>-h
525+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/napari/napari.sh<span class="w"> </span>-h
526526
</pre></div>
527527
</div>
528528
<p>or</p>
529-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/napari/napari.sh<span class="w"> </span>--help
529+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/napari/napari.sh<span class="w"> </span>--help
530530
</pre></div>
531531
</div>
532532
</section>

GUI/PlantSeg.html

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -498,11 +498,11 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
498498
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
499499
<section id="to-install">
500500
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
501-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/plantseg/plantseg.sh<span class="w"> </span>-i
501+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/plantseg/plantseg.sh<span class="w"> </span>-i
502502
</pre></div>
503503
</div>
504504
<p>or</p>
505-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/plantseg/plantseg.sh<span class="w"> </span>--install
505+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/plantseg/plantseg.sh<span class="w"> </span>--install
506506
</pre></div>
507507
</div>
508508
<div class="admonition tip">
@@ -512,21 +512,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
512512
</section>
513513
<section id="to-uninstall">
514514
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
515-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/plantseg/plantseg.sh<span class="w"> </span>-u
515+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/plantseg/plantseg.sh<span class="w"> </span>-u
516516
</pre></div>
517517
</div>
518518
<p>or</p>
519-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/plantseg/plantseg.sh<span class="w"> </span>--uninstall
519+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/plantseg/plantseg.sh<span class="w"> </span>--uninstall
520520
</pre></div>
521521
</div>
522522
</section>
523523
<section id="for-help">
524524
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
525-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/plantseg/plantseg.sh<span class="w"> </span>-h
525+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/plantseg/plantseg.sh<span class="w"> </span>-h
526526
</pre></div>
527527
</div>
528528
<p>or</p>
529-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/plantseg/plantseg.sh<span class="w"> </span>--help
529+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/plantseg/plantseg.sh<span class="w"> </span>--help
530530
</pre></div>
531531
</div>
532532
</section>

GUI/QuPath.html

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -502,16 +502,16 @@ <h3>Login to a compute node<a class="headerlink" href="#login-to-a-compute-node"
502502
<h3>Run Installer<a class="headerlink" href="#run-installer" title="Link to this heading">#</a></h3>
503503
<section id="to-install">
504504
<h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="Link to this heading">#</a></h4>
505-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/qupath/qupath.sh<span class="w"> </span>-i
505+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/qupath/qupath.sh<span class="w"> </span>-i
506506
</pre></div>
507507
</div>
508508
<p>or</p>
509-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/qupath/qupath.sh<span class="w"> </span>--install
509+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/qupath/qupath.sh<span class="w"> </span>--install
510510
</pre></div>
511511
</div>
512512
<div class="admonition hint">
513513
<p class="admonition-title">Example</p>
514-
<code>/n/app/bias/qupath/qupath.sh -i -p /path/to/your/installation/directory</code>
514+
<code>/n/app/bias/install/qupath/qupath.sh -i -p /path/to/your/installation/directory</code>
515515
</div>
516516
<div class="admonition tip">
517517
<p class="admonition-title">Tip</p>
@@ -520,21 +520,21 @@ <h4>To <strong>install</strong>:<a class="headerlink" href="#to-install" title="
520520
</section>
521521
<section id="to-uninstall">
522522
<h4>To <strong>uninstall</strong>:<a class="headerlink" href="#to-uninstall" title="Link to this heading">#</a></h4>
523-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/qupath/qupath.sh<span class="w"> </span>-u
523+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/qupath/qupath.sh<span class="w"> </span>-u
524524
</pre></div>
525525
</div>
526526
<p>or</p>
527-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/qupath/qupath.sh<span class="w"> </span>--uninstall
527+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/qupath/qupath.sh<span class="w"> </span>--uninstall
528528
</pre></div>
529529
</div>
530530
</section>
531531
<section id="for-help">
532532
<h4>For <strong>help</strong>:<a class="headerlink" href="#for-help" title="Link to this heading">#</a></h4>
533-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/qupath/qupath.sh<span class="w"> </span>-h
533+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/qupath/qupath.sh<span class="w"> </span>-h
534534
</pre></div>
535535
</div>
536536
<p>or</p>
537-
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/qupath/qupath.sh<span class="w"> </span>--help
537+
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>/n/app/bias/install/qupath/qupath.sh<span class="w"> </span>--help
538538
</pre></div>
539539
</div>
540540
</section>

0 commit comments

Comments
 (0)