update-version-118.0.2

Author: keenangraham

README.md

@@ -4,8 +4,8 @@ The Python client is autogenerated based on this [IGVF OpenAPI specification](ht
 
 *Note while the API endpoints are relatively stable, the underlying data model is still evolving, and changing fields/types can cause breaking changes. The latest version of the client reflects the latest version of the schema used by the API.*
 
-- API version: 117.0.0
-- Package version: 117.0.0
+- API version: 118.0.2
+- Package version: 118.0.2
 - Generator version: 7.7.0
 - Build package: org.openapitools.codegen.languages.PythonClientCodegen
 

docs/HumanDonor.md

@@ -30,7 +30,6 @@ Name | Type | Description | Notes
 **description** | **str** | A plain text description of the object. | [optional] 
 **dbxrefs** | **List[str]** | Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF donors. | [optional] 
 **sex** | **str** | Sex of the donor. | [optional] 
-**phenotypic_features** | **List[str]** | A list of associated phenotypic features of the donor. | [optional] 
 **virtual** | **bool** | Virtual donors are not representing actual human or model organism donors, samples coming from which were used in experiments, but rather capturing metadata about hypothetical donors that the reported analysis results are relevant for. | [optional] 
 **supersedes** | **List[str]** | The donor(s) that this donor supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 

docs/IgvfApi.md

@@ -36,7 +36,6 @@ Name | Type | Description | Notes
 **upper_bound_age** | **float** | Upper bound of age of the organism at the time of collection of the sample. | [optional] 
 **age_units** | **str** | The units of time associated with age of the biosample. | [optional] 
 **sample_terms** | **List[str]** | Ontology terms identifying a biosample. | [optional] 
-**disease_terms** | **List[str]** | Ontology term of the disease associated with the biosample. | [optional] 
 **pooled_from** | **List[str]** | The biosamples this biosample is pooled from. | [optional] 
 **originated_from** | **str** | Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification. | [optional] 
 **treatments** | **List[str]** | A list of treatments applied to the biosample with the purpose of perturbation. | [optional] 
@@ -56,7 +55,7 @@ Name | Type | Description | Notes
 **virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of vectors introduced to this sample prior to performing an assay. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
-**nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
+**construct_delivery_methods** | **List[str]** | Methods used to deliver construct libraries into the sample. | [optional] 
 **time_post_library_delivery** | **float** | The time that elapsed past the time-point when the construct library sets were introduced. | [optional] 
 **time_post_library_delivery_units** | **str** | The units of time that elapsed past the point when the construct library sets were introduced. | [optional] 
 **protocols** | **List[str]** | Links to the protocol(s) for preparing the samples on Protocols.io. | [optional] 

docs/InVitroSystem.md

@@ -64,7 +64,6 @@ Name | Type | Description | Notes
 **revoke_detail** | **str** | Explanation of why an object was transitioned to the revoked status. | [optional] 
 **dbxrefs** | **List[str]** | Biosample identifiers from external resources, such as Biosample database or Cellosaurus. | [optional] 
 **sex** | **str** |  | [optional] 
-**phenotypic_features** | **List[str]** | A list of associated phenotypic features of the sample. | [optional] 
 **virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **supersedes** | **List[str]** | The sample(s) that this sample supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 
@@ -354,21 +353,21 @@ Name | Type | Description | Notes
 **upper_bound_age** | **float** | Upper bound of age of the organism at the time of collection of the sample. | [optional] 
 **age_units** | **str** | The units of time associated with age of the biosample. | [optional] 
 **sample_terms** | **List[str]** | Ontology terms identifying a biosample. | [optional] 
-**disease_terms** | **List[str]** | Ontology term of the disease associated with the biosample. | [optional] 
 **pooled_from** | **List[str]** | The biosamples this biosample is pooled from. | [optional] 
 **originated_from** | **str** | Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification. | [optional] 
 **treatments** | **List[str]** | A list of treatments applied to the biosample with the purpose of perturbation. | [optional] 
 **biomarkers** | **List[str]** | Biological markers that are associated with this sample. | [optional] 
 **embryonic** | **bool** | Biosample is embryonic. | [optional] 
 **modifications** | **List[str]** | Links to modifications applied to this biosample. | [optional] 
 **cellular_sub_pool** | **str** | Cellular sub-pool fraction of the sample. Also known as PKR and sub-library. | [optional] 
+**phenotypic_features** | **List[str]** | A list of associated phenotypic features of the sample. | [optional] 
 **starting_amount** | **float** | The initial quantity of samples obtained. | [optional] 
 **starting_amount_units** | **str** | The units used to quantify the amount of samples obtained. | [optional] 
 **date_obtained** | **str** | The date the sample was harvested, dissected or created, depending on the type of the sample. | [optional] 
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
+**construct_delivery_methods** | **List[str]** | Methods used to deliver construct libraries into the sample. | [optional] 
 **time_post_library_delivery** | **float** | The time that elapsed past the time-point when the construct library sets were introduced. | [optional] 
 **time_post_library_delivery_units** | **str** | The units of time that elapsed past the point when the construct library sets were introduced. | [optional] 
 **selection_conditions** | **List[str]** | The conditions used for selecting the sample. | [optional] 

docs/Item.md

@@ -37,7 +37,7 @@ Name | Type | Description | Notes
 **virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of the samples included in this multiplexed sample. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
-**nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
+**construct_delivery_methods** | **List[str]** | The construct delivery methods of the samples included in this multiplexed sample. | [optional] 
 **time_post_library_delivery** | **float** | The time that elapsed past the time-point when the construct library sets were introduced. | [optional] 
 **time_post_library_delivery_units** | **str** | The units of time that elapsed past the point when the construct library sets were introduced. | [optional] 
 **protocols** | **List[str]** | Links to the protocol(s) for preparing the samples on Protocols.io. | [optional] 
@@ -60,7 +60,7 @@ Name | Type | Description | Notes
 **demultiplexed_to** | **List[str]** | The in vitro system samples this multiplexed sample has been demultiplexed into. | [optional] 
 **sample_terms** | **List[str]** | The sample terms of the samples included in this multiplexed sample. | [optional] 
 **taxa** | **str** | The species of the organism. | [optional] 
-**disease_terms** | **List[str]** | The disease terms of the samples included in this multiplexed sample. | [optional] 
+**phenotypic_features** | **List[str]** | The phenotypic features of the samples included in this multiplexed sample. | [optional] 
 **treatments** | **List[str]** | The treatments of the samples included in this multiplexed sample. | [optional] 
 **modifications** | **List[str]** | The modifications of the samples included in this multiplexed sample. | [optional] 
 **donors** | **List[str]** | The donors of the samples included in this multiplexed sample. | [optional] 

docs/MultiplexedSample.md

@@ -36,7 +36,6 @@ Name | Type | Description | Notes
 **upper_bound_age** | **float** | Upper bound of age of the organism at the time of collection of the sample. | [optional] 
 **age_units** | **str** | The units of time associated with age of the biosample. | [optional] 
 **sample_terms** | **List[str]** | Ontology terms identifying a biosample. | [optional] 
-**disease_terms** | **List[str]** | Ontology term of the disease associated with the biosample. | [optional] 
 **pooled_from** | **List[str]** | The biosamples this biosample is pooled from. | [optional] 
 **originated_from** | **str** | Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification. | [optional] 
 **treatments** | **List[str]** | A list of treatments applied to the biosample with the purpose of perturbation. | [optional] 
@@ -56,7 +55,7 @@ Name | Type | Description | Notes
 **virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of vectors introduced to this sample prior to performing an assay. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
-**nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
+**construct_delivery_methods** | **List[str]** | Methods used to deliver construct libraries into the sample. | [optional] 
 **time_post_library_delivery** | **float** | The time that elapsed past the time-point when the construct library sets were introduced. | [optional] 
 **time_post_library_delivery_units** | **str** | The units of time that elapsed past the point when the construct library sets were introduced. | [optional] 
 **protocols** | **List[str]** | Links to the protocol(s) for preparing the samples on Protocols.io. | [optional] 

docs/PrimaryCell.md

@@ -1,6 +1,6 @@
 # PseudobulkSet
 
-
+A file set for pseudobulks. Pseudobulk sets represent the results of a computational analysis of multiple single cells that share a cell type.
 
 ## Properties
 

docs/PseudobulkSet.md

@@ -33,7 +33,6 @@ Name | Type | Description | Notes
 **description** | **str** | A plain text description of the object. | [optional] 
 **dbxrefs** | **List[str]** | Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF donors. | [optional] 
 **sex** | **str** | Sex of the donor. | [optional] 
-**phenotypic_features** | **List[str]** | A list of associated phenotypic features of the donor. | [optional] 
 **virtual** | **bool** | Virtual donors are not representing actual human or model organism donors, samples coming from which were used in experiments, but rather capturing metadata about hypothetical donors that the reported analysis results are relevant for. | [optional] 
 **supersedes** | **List[str]** | The donor(s) that this donor supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
 **strain_background** | **str** | The specific parent strain designation of a non-human donor. | [optional] 

docs/RodentDonor.md

@@ -64,7 +64,6 @@ Name | Type | Description | Notes
 **revoke_detail** | **str** | Explanation of why an object was transitioned to the revoked status. | [optional] 
 **dbxrefs** | **List[str]** | Biosample identifiers from external resources, such as Biosample database or Cellosaurus. | [optional] 
 **sex** | **str** |  | [optional] 
-**phenotypic_features** | **List[str]** | A list of associated phenotypic features of the sample. | [optional] 
 **virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **supersedes** | **List[str]** | The sample(s) that this sample supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 
@@ -354,21 +353,21 @@ Name | Type | Description | Notes
 **upper_bound_age** | **float** | Upper bound of age of the organism at the time of collection of the sample. | [optional] 
 **age_units** | **str** | The units of time associated with age of the biosample. | [optional] 
 **sample_terms** | **List[str]** | Ontology terms identifying a biosample. | [optional] 
-**disease_terms** | **List[str]** | Ontology term of the disease associated with the biosample. | [optional] 
 **pooled_from** | **List[str]** | The biosamples this biosample is pooled from. | [optional] 
 **originated_from** | **str** | Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification. | [optional] 
 **treatments** | **List[str]** | A list of treatments applied to the biosample with the purpose of perturbation. | [optional] 
 **biomarkers** | **List[str]** | Biological markers that are associated with this sample. | [optional] 
 **embryonic** | **bool** | Biosample is embryonic. | [optional] 
 **modifications** | **List[str]** | Links to modifications applied to this biosample. | [optional] 
 **cellular_sub_pool** | **str** | Cellular sub-pool fraction of the sample. Also known as PKR and sub-library. | [optional] 
+**phenotypic_features** | **List[str]** | A list of associated phenotypic features of the sample. | [optional] 
 **starting_amount** | **float** | The initial quantity of samples obtained. | [optional] 
 **starting_amount_units** | **str** | The units used to quantify the amount of samples obtained. | [optional] 
 **date_obtained** | **str** | The date the sample was harvested, dissected or created, depending on the type of the sample. | [optional] 
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
+**construct_delivery_methods** | **List[str]** | Methods used to deliver construct libraries into the sample. | [optional] 
 **time_post_library_delivery** | **float** | The time that elapsed past the time-point when the construct library sets were introduced. | [optional] 
 **time_post_library_delivery_units** | **str** | The units of time that elapsed past the point when the construct library sets were introduced. | [optional] 
 **selection_conditions** | **List[str]** | The conditions used for selecting the sample. | [optional]