update-version-111.0.0

Author: keenangraham

README.md

@@ -4,8 +4,8 @@ The Python client is autogenerated based on this [IGVF OpenAPI specification](ht
 
 *Note while the API endpoints are relatively stable, the underlying data model is still evolving, and changing fields/types can cause breaking changes. The latest version of the client reflects the latest version of the schema used by the API.*
 
-- API version: 110.0.0
-- Package version: 110.0.0
+- API version: 111.0.0
+- Package version: 111.0.0
 - Generator version: 7.7.0
 - Build package: org.openapitools.codegen.languages.PythonClientCodegen
 

docs/IgvfApi.md

@@ -52,7 +52,7 @@ Name | Type | Description | Notes
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of vectors introduced to this sample prior to performing an assay. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
 **nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
@@ -87,7 +87,7 @@ Name | Type | Description | Notes
 **upper_bound_age_in_hours** | **float** | Upper bound of age of organism in hours at the time of collection of the sample. | [optional] 
 **lower_bound_age_in_hours** | **float** | Lower bound of age of organism in hours at the time of collection of the sample . | [optional] 
 **pooled_in** | **List[str]** | The pooled samples in which this sample is included. | [optional] 
-**demultiplexed_to** | **List[str]** | The parts into which this sample has been demultiplexed. | [optional] 
+**demultiplexed_to** | **List[str]** | The in vitro system samples this in vitro system sample has been demultiplexed into. | [optional] 
 
 ## Example
 

docs/InVitroSystem.md

@@ -65,7 +65,7 @@ Name | Type | Description | Notes
 **dbxrefs** | **List[str]** | Biosample identifiers from external resources, such as Biosample database or Cellosaurus. | [optional] 
 **sex** | **str** |  | [optional] 
 **phenotypic_features** | **List[str]** | A list of associated phenotypic features of the donor. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **supersedes** | **List[str]** | The sample(s) that this sample supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 
 **ethnicities** | **List[str]** | Ethnicity of the donor. | [optional] 
@@ -390,19 +390,17 @@ Name | Type | Description | Notes
 **upper_bound_age_in_hours** | **float** | Upper bound of age of organism in hours at the time of collection of the sample. | [optional] 
 **lower_bound_age_in_hours** | **float** | Lower bound of age of organism in hours at the time of collection of the sample . | [optional] 
 **pooled_in** | **List[str]** | The pooled samples in which this sample is included. | [optional] 
-**demultiplexed_to** | **List[str]** | The parts into which this sample has been demultiplexed. | [optional] 
+**demultiplexed_to** | **List[str]** | The in vitro system samples this multiplexed sample has been demultiplexed into. | [optional] 
 **multiplexed_samples** | **List[str]** | The samples multiplexed together to produce this sample. | [optional] 
 **multiplexing_methods** | **List[str]** | The methods used for multiplexing and demultiplexing. | [optional] 
 **sample_material** | **str** |  | [optional] 
 **pmi** | **int** | The amount of time elapsed since death. | [optional] 
 **pmi_units** | **str** | The unit in which the PMI time was reported. | [optional] 
-**ccf_id** | **str** | HubMap Common Coordinate Framework unique identifier corresponding to the organ, biological structure, and spatial location of the tissue specimen within an organ. | [optional] 
 **preservation_method** | **str** | The method by which the tissue/organ was preserved: cryopreservation (slow-freeze) or flash-freezing. | [optional] 
 **used_by** | **List[str]** | The component(s) of the IGVF consortium that utilize this software. | [optional] 
 **categories** | **List[str]** | The general categories of this software. | [optional] 
 **versions** | **List[str]** | A list of versions that have been released for this software. | [optional] 
 **version** | **str** | The version of a particular software. | [optional] 
-**download_id** | **str** | The MD5 checksum, SHA-1 commit ID, image hash, or similar permanent identifier of the particular version of software used. | [optional] 
 **amount** | **float** | Specific quantity of the applied treatment (used in conjunction with amount_units). | [optional] 
 **amount_units** | **str** | A unit for an amount other than those for time or temperature. | [optional] 
 **duration** | **float** | Duration indicates the time elapsed between the start and end of the treatment. | [optional] 

docs/Item.md

@@ -34,7 +34,7 @@ Name | Type | Description | Notes
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of the samples included in this multiplexed sample. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
 **nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
@@ -57,6 +57,7 @@ Name | Type | Description | Notes
 **origin_of** | **List[str]** | The samples which originate from this sample, such as through a process of cell fate change or the introduction of a genetic material. | [optional] 
 **institutional_certificates** | **List[str]** | The institutional certificates of the samples included in this multiplexed sample. | [optional] 
 **superseded_by** | **List[str]** | Sample(s) this sample is superseded by virtue of those sample(s) being newer, better, or a fixed version of etc. than this one. | [optional] 
+**demultiplexed_to** | **List[str]** | The in vitro system samples this multiplexed sample has been demultiplexed into. | [optional] 
 **sample_terms** | **List[str]** | The sample terms of the samples included in this multiplexed sample. | [optional] 
 **taxa** | **str** | The species of the organism. | [optional] 
 **disease_terms** | **List[str]** | The disease terms of the samples included in this multiplexed sample. | [optional] 

docs/MultiplexedSample.md

@@ -52,7 +52,7 @@ Name | Type | Description | Notes
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of vectors introduced to this sample prior to performing an assay. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
 **nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 

docs/PrimaryCell.md

@@ -65,7 +65,7 @@ Name | Type | Description | Notes
 **dbxrefs** | **List[str]** | Biosample identifiers from external resources, such as Biosample database or Cellosaurus. | [optional] 
 **sex** | **str** |  | [optional] 
 **phenotypic_features** | **List[str]** | A list of associated phenotypic features of the donor. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **supersedes** | **List[str]** | The sample(s) that this sample supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] 
 **related_donors** | [**List[RelatedDonor]**](RelatedDonor.md) | Familial relations of this donor. | [optional] 
 **ethnicities** | **List[str]** | Ethnicity of the donor. | [optional] 
@@ -390,19 +390,17 @@ Name | Type | Description | Notes
 **upper_bound_age_in_hours** | **float** | Upper bound of age of organism in hours at the time of collection of the sample. | [optional] 
 **lower_bound_age_in_hours** | **float** | Lower bound of age of organism in hours at the time of collection of the sample . | [optional] 
 **pooled_in** | **List[str]** | The pooled samples in which this sample is included. | [optional] 
-**demultiplexed_to** | **List[str]** | The parts into which this sample has been demultiplexed. | [optional] 
+**demultiplexed_to** | **List[str]** | The in vitro system samples this multiplexed sample has been demultiplexed into. | [optional] 
 **multiplexed_samples** | **List[str]** | The samples multiplexed together to produce this sample. | [optional] 
 **multiplexing_methods** | **List[str]** | The methods used for multiplexing and demultiplexing. | [optional] 
 **sample_material** | **str** |  | [optional] 
 **pmi** | **int** | The amount of time elapsed since death. | [optional] 
 **pmi_units** | **str** | The unit in which the PMI time was reported. | [optional] 
-**ccf_id** | **str** | HubMap Common Coordinate Framework unique identifier corresponding to the organ, biological structure, and spatial location of the tissue specimen within an organ. | [optional] 
 **preservation_method** | **str** | The method by which the tissue/organ was preserved: cryopreservation (slow-freeze) or flash-freezing. | [optional] 
 **used_by** | **List[str]** | The component(s) of the IGVF consortium that utilize this software. | [optional] 
 **categories** | **List[str]** | The general categories of this software. | [optional] 
 **versions** | **List[str]** | A list of versions that have been released for this software. | [optional] 
 **version** | **str** | The version of a particular software. | [optional] 
-**download_id** | **str** | The MD5 checksum, SHA-1 commit ID, image hash, or similar permanent identifier of the particular version of software used. | [optional] 
 **amount** | **float** | Specific quantity of the applied treatment (used in conjunction with amount_units). | [optional] 
 **amount_units** | **str** | A unit for an amount other than those for time or temperature. | [optional] 
 **duration** | **float** | Duration indicates the time elapsed between the start and end of the treatment. | [optional] 

docs/SearchResultItem.md

@@ -23,7 +23,6 @@ Name | Type | Description | Notes
 **description** | **str** | A plain text description of the object. | [optional] 
 **software** | **str** | Unique name of the software package. | [optional] 
 **version** | **str** | The version of a particular software. | [optional] 
-**download_id** | **str** | The MD5 checksum, SHA-1 commit ID, image hash, or similar permanent identifier of the particular version of software used. | [optional] 
 **id** | **str** |  | [optional] 
 **type** | **List[str]** |  | [optional] 
 **summary** | **str** |  | [optional] 

docs/SoftwareVersion.md

@@ -37,7 +37,7 @@ Name | Type | Description | Notes
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of vectors introduced to this sample prior to performing an assay. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
 **nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 

docs/TechnicalSample.md

@@ -52,7 +52,7 @@ Name | Type | Description | Notes
 **part_of** | **str** | Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth. | [optional] 
 **sorted_from** | **str** | Links to a larger sample from which this sample was obtained through sorting. | [optional] 
 **sorted_from_detail** | **str** | Detail for sample sorted into fractions capturing information about sorting. | [optional] 
-**virtual** | **bool** | Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for. | [optional] 
+**virtual** | **bool** | Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing. | [optional] 
 **construct_library_sets** | **List[str]** | The construct library sets of vectors introduced to this sample prior to performing an assay. | [optional] 
 **moi** | **float** | The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI. | [optional] 
 **nucleic_acid_delivery** | **str** | Method of introduction of nucleic acid into the cell. | [optional] 
@@ -63,7 +63,6 @@ Name | Type | Description | Notes
 **selection_conditions** | **List[str]** | The conditions used for selecting the sample. | [optional] 
 **pmi** | **int** | The amount of time elapsed since death. | [optional] 
 **pmi_units** | **str** | The unit in which the PMI time was reported. | [optional] 
-**ccf_id** | **str** | HubMap Common Coordinate Framework unique identifier corresponding to the organ, biological structure, and spatial location of the tissue specimen within an organ. | [optional] 
 **preservation_method** | **str** | The method by which the tissue/organ was preserved: cryopreservation (slow-freeze) or flash-freezing. | [optional] 
 **id** | **str** |  | [optional] 
 **type** | **List[str]** |  | [optional]