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NAMESPACE
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87 lines (86 loc) · 2.23 KB
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# Generated by roxygen2: do not edit by hand
S3method(ComputeModuleScore,Seurat)
S3method(ComputeModuleScore,default)
S3method(merge,CellProject)
S3method(plot,GridDensity)
S3method(subset,GridDensity)
export(AbundanceTest)
export(AddProjQual)
export(AlluviaPlot)
export(BoxPlot)
export(ComputeModuleScore)
export(CreateReference)
export(DimTheme)
export(EstimateKnnDensity)
export(FindOptimalK)
export(FitEnsemblMultiClassif)
export(FitEnsembleSVM)
export(GroupPreferencePlot)
export(KnnLabelTransfer)
export(LabelTransfer)
export(MajorityVote)
export(MapQCPlot)
export(MapQuery)
export(MergeCells)
export(PercentageStat)
export(PlotProjection)
export(PredictNewdata)
export(ProjectNewdata)
export(RefineProjection)
export(RunCNMF)
export(SplitCellProject)
export(VolcanoPlot)
export(mcFindAllMarkers)
exportClasses(CellProject)
import(ComplexHeatmap)
import(dplyr)
import(ggplot2)
import(mlr3verse)
import(patchwork)
importFrom(RANN,nn2)
importFrom(dplyr,arrange)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_area)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(grid,gpar)
importFrom(grid,grid.text)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(mlr3,as_task_classif)
importFrom(mlr3,as_task_regr)
importFrom(mlr3,lrn)
importFrom(rlang,.data)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,wilcox.test)
importFrom(utils,head)
importFrom(utils,write.table)