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sessionInfo.txt
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79 lines (74 loc) · 4.66 KB
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R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /home/ruiwenfu/.conda/envs/r4/lib/libopenblasp-r0.3.12.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] ggrepel_0.9.1 repr_1.1.3
[3] fgsea_1.16.0 nebula_1.1.8
[5] pheatmap_1.0.12 SingleCellExperiment_1.12.0
[7] SummarizedExperiment_1.20.0 Biobase_2.50.0
[9] GenomicRanges_1.42.0 GenomeInfoDb_1.26.7
[11] IRanges_2.24.1 S4Vectors_0.28.1
[13] BiocGenerics_0.36.0 MatrixGenerics_1.2.1
[15] matrixStats_0.60.0 Matrix.utils_0.9.8
[17] Matrix_1.3-4 data.table_1.14.0
[19] RColorBrewer_1.1-2 forcats_0.5.1
[21] stringr_1.4.0 purrr_0.3.4
[23] readr_1.4.0 tidyr_1.1.3
[25] tibble_3.1.3 ggplot2_3.3.5
[27] tidyverse_1.3.0 dplyr_1.0.7
[29] SeuratObject_4.0.2 Seurat_4.0.3
loaded via a namespace (and not attached):
[1] readxl_1.3.1 uuid_0.1-4 backports_1.2.1
[4] fastmatch_1.1-0 plyr_1.8.6 igraph_1.2.6
[7] lazyeval_0.2.2 splines_4.0.3 BiocParallel_1.24.1
[10] listenv_0.8.0 scattermore_0.7 digest_0.6.27
[13] htmltools_0.5.1.1 fansi_0.5.0 magrittr_2.0.1
[16] tensor_1.5 cluster_2.1.1 ROCR_1.0-11
[19] globals_0.14.0 modelr_0.1.8 spatstat.sparse_2.0-0
[22] colorspace_2.0-2 rvest_1.0.0 haven_2.3.1
[25] crayon_1.4.1 RCurl_1.98-1.3 jsonlite_1.7.2
[28] spatstat.data_2.1-0 survival_3.2-10 zoo_1.8-9
[31] glue_1.4.2 polyclip_1.10-0 gtable_0.3.0
[34] zlibbioc_1.36.0 XVector_0.30.0 leiden_0.3.9
[37] DelayedArray_0.16.3 RcppZiggurat_0.1.6 future.apply_1.7.0
[40] abind_1.4-5 scales_1.1.1 DBI_1.1.1
[43] miniUI_0.1.1.1 Rcpp_1.0.7 viridisLite_0.4.0
[46] xtable_1.8-4 reticulate_1.20 spatstat.core_2.3-0
[49] htmlwidgets_1.5.3 httr_1.4.2 ellipsis_0.3.2
[52] ica_1.0-2 pkgconfig_2.0.3 uwot_0.1.10
[55] dbplyr_2.1.0 deldir_0.2-10 utf8_1.2.2
[58] tidyselect_1.1.1 rlang_0.4.11 reshape2_1.4.4
[61] later_1.2.0 munsell_0.5.0 cellranger_1.1.0
[64] tools_4.0.3 cli_3.0.1 generics_0.1.0
[67] broom_0.7.5 ggridges_0.5.3 evaluate_0.14
[70] fastmap_1.1.0 goftest_1.2-2 fs_1.5.0
[73] fitdistrplus_1.1-5 RANN_2.6.1 pbapply_1.4-3
[76] future_1.21.0 nlme_3.1-152 mime_0.11
[79] grr_0.9.5 xml2_1.3.2 compiler_4.0.3
[82] rstudioapi_0.13 plotly_4.9.4.1 png_0.1-7
[85] spatstat.utils_2.2-0 reprex_2.0.0 stringi_1.7.3
[88] lattice_0.20-41 IRdisplay_1.0 nloptr_1.2.2.2
[91] vctrs_0.3.8 trust_0.1-8 pillar_1.6.2
[94] lifecycle_1.0.0 spatstat.geom_2.2-2 lmtest_0.9-38
[97] RcppAnnoy_0.0.19 cowplot_1.1.1 bitops_1.0-7
[100] irlba_2.3.3 httpuv_1.6.1 patchwork_1.1.0.9000
[103] R6_2.5.0 promises_1.2.0.1 KernSmooth_2.23-18
[106] gridExtra_2.3 parallelly_1.27.0 codetools_0.2-18
[109] MASS_7.3-53.1 assertthat_0.2.1 withr_2.4.2
[112] sctransform_0.3.2 GenomeInfoDbData_1.2.4 mgcv_1.8-34
[115] hms_1.0.0 grid_4.0.3 rpart_4.1-15
[118] IRkernel_1.1.1 Rfast_2.0.3 Rtsne_0.15
[121] pbdZMQ_0.3-5 shiny_1.6.0 lubridate_1.7.10
[124] base64enc_0.1-3