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Ensure extra memory for BWA-mem
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primeseq/src/org/labkey/primeseq/pipeline/SequenceJobResourceAllocator.java

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Original file line numberDiff line numberDiff line change
@@ -96,6 +96,11 @@ private int getAlignerIndexMem(PipelineJob job)
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}
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}
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}
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else if (job.getClass().getName().endsWith("ReferenceLibraryPipelineJob"))
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{
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// This almost always includes bwa-mem
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return 72;
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}
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return 36;
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}

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