Correct issue with arg file names and MultiSourceAnnotator

bbimber · bbimber · commit 8e37da336000 · 2023-10-26T08:47:23.000-07:00
diff --git a/mGAP/src/org/labkey/mgap/pipeline/AnnotationStep.java b/mGAP/src/org/labkey/mgap/pipeline/AnnotationStep.java
@@ -631,7 +631,7 @@ private void addToolFieldNames(String toolName, String argName, List<String> opt
             getPipelineCtx().getLogger().debug("First field for tool: " + toolName + ", arg: " + argName + ", was: " + fields.get(0));
         }
 
-        File fieldFile = new File(outDir, toolName + "Fields.args");
+        File fieldFile = new File(outDir, toolName + argName + ".Fields.args");
         try (PrintWriter writer = PrintWriters.getPrintWriter(fieldFile))
         {
             fields.forEach(writer::println);

Original file line number	Diff line number	Diff line change
`@@ -631,7 +631,7 @@ private void addToolFieldNames(String toolName, String argName, List<String> opt`
`631`	`631`	`getPipelineCtx().getLogger().debug("First field for tool: " + toolName + ", arg: " + argName + ", was: " + fields.get(0));`
`632`	`632`	`}`
`633`	`633`
`634`		`- File fieldFile = new File(outDir, toolName + "Fields.args");`
	`634`	`+ File fieldFile = new File(outDir, toolName + argName + ".Fields.args");`
`635`	`635`	`try (PrintWriter writer = PrintWriters.getPrintWriter(fieldFile))`
`636`	`636`	`{`
`637`	`637`	`fields.forEach(writer::println);`