Reduce logging

bbimber · bbimber · commit a208e1e8d68c · 2023-09-30T07:28:43.000-07:00
diff --git a/mGAP/src/org/labkey/mgap/pipeline/mGapReleaseGenerator.java b/mGAP/src/org/labkey/mgap/pipeline/mGapReleaseGenerator.java
@@ -1135,7 +1135,7 @@ private void inspectAndSummarizeVcf(JobContext ctx, File vcfInput, GeneToNameTra
                                 }
 
                                 if (tokens.length > 7 && !"protein_coding".equals(tokens[7])) {
-                                    ctx.getLogger().info("skipping non protein_coding ANN: " + ann);
+//                                    ctx.getLogger().info("skipping non protein_coding ANN: " + ann);
                                     continue;
                                 }
 

Original file line number	Diff line number	Diff line change
`@@ -1135,7 +1135,7 @@ private void inspectAndSummarizeVcf(JobContext ctx, File vcfInput, GeneToNameTra`
`1135`	`1135`	`}`
`1136`	`1136`
`1137`	`1137`	`if (tokens.length > 7 && !"protein_coding".equals(tokens[7])) {`
`1138`		`- ctx.getLogger().info("skipping non protein_coding ANN: " + ann);`
	`1138`	`+// ctx.getLogger().info("skipping non protein_coding ANN: " + ann);`
`1139`	`1139`	`continue;`
`1140`	`1140`	`}`
`1141`	`1141`