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Correct SnpSift args
1 parent d3eccad commit b2a5ccd

1 file changed

Lines changed: 2 additions & 3 deletions

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mGAP/src/org/labkey/mgap/pipeline/SnpSiftWrapper.java

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -32,12 +32,11 @@ public void runSnpSift(File dbnsfpFile, File input, File output) throws Pipeline
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params.addAll(SequencePipelineService.get().getJavaOpts());
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params.add("-jar");
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params.add(getSnpSiftJar().getPath());
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params.add("dbnsfp");
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params.add("DbNsfp");
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params.add("-db");
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params.add(dbnsfpFile.getPath());
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params.add("-noStats");
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params.add("-nodownload");
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params.add("-noDownload");
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params.add(input.getPath());
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