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Drop unused bissnp code
1 parent 8daa92a commit c823024

6 files changed

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primeseq/src/org/labkey/primeseq/PrimeseqModule.java

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@@ -32,8 +32,6 @@
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import org.labkey.api.view.WebPartFactory;
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import org.labkey.primeseq.analysis.CombineMethylationRatesHandler;
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import org.labkey.primeseq.analysis.MethylationRateComparisonHandler;
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import org.labkey.primeseq.pipeline.BisSnpGenotyperAnalysis;
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import org.labkey.primeseq.pipeline.BisSnpIndelRealignerStep;
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import org.labkey.primeseq.pipeline.BismarkWrapper;
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import org.labkey.primeseq.pipeline.BlastPipelineJobResourceAllocator;
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import org.labkey.primeseq.pipeline.ClusterMaintenanceTask;
@@ -114,9 +112,6 @@ public PipelineStartup()
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SequencePipelineService.get().registerPipelineStep(new BismarkWrapper.Provider());
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SequencePipelineService.get().registerPipelineStep(new BismarkWrapper.MethylationExtractorProvider());
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SequencePipelineService.get().registerPipelineStep(new BisSnpIndelRealignerStep.Provider());
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SequencePipelineService.get().registerPipelineStep(new BisSnpGenotyperAnalysis.Provider());
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SequenceAnalysisService.get().registerFileHandler(new MethylationRateComparisonHandler());
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SequenceAnalysisService.get().registerFileHandler(new CombineMethylationRatesHandler());
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primeseq/src/org/labkey/primeseq/pipeline/AbstractBisSnpWrapper.java

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primeseq/src/org/labkey/primeseq/pipeline/BisSnpGenotyperAnalysis.java

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primeseq/src/org/labkey/primeseq/pipeline/BisSnpIndelRealignerStep.java

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