Add AuditSummaryUserSchema, mainly for use in ETLs

bbimber · bbimber · commit fb0c6fa4592b · 2023-08-29T09:12:29.000-07:00
diff --git a/PMR/build.gradle b/PMR/build.gradle
@@ -7,6 +7,7 @@ plugins {
 dependencies {
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:Studies", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:dataintegration", depProjectConfig: "published", depExtension: "module")
+    BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:discvrcore", depProjectConfig: "published", depExtension: "module")
 
     BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:DiscvrLabKeyModules:Studies", depProjectConfig: "apiJarFile")
     BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:dataintegration", depProjectConfig: "apiJarFile")
diff --git a/mGAP/build.gradle b/mGAP/build.gradle
@@ -31,4 +31,5 @@ dependencies {
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:LabDevKitModules:LDK", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:LabDevKitModules:laboratory", depProjectConfig: "published", depExtension: "module")
+    BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:discvrcore", depProjectConfig: "published", depExtension: "module")
 }
diff --git a/primeseq/build.gradle b/primeseq/build.gradle
@@ -31,6 +31,7 @@ dependencies {
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:cluster", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:jbrowse", depProjectConfig: "published", depExtension: "module")
+    BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:discvrcore", depProjectConfig: "published", depExtension: "module")
 
     BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:dataintegration", depProjectConfig: "apiJarFile")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:dataintegration", depProjectConfig: "published", depExtension: "module")
diff --git a/primeseq/src/org/labkey/primeseq/pipeline/MhcCleanupPipelineJob.java b/primeseq/src/org/labkey/primeseq/pipeline/MhcCleanupPipelineJob.java
@@ -66,7 +66,7 @@ public class MhcCleanupPipelineJob extends PipelineJob
     private boolean _dropDisabledResults = true;
     private double _lineageThreshold = 0.15;
     private double _alleleGroupThreshold = 0.02;
-    private boolean _dropMultiLineageMHC = true;
+    private boolean _dropMultiLineageMHC = false;
     private boolean _combineRedundantGroups = true;
 
     public static class Provider extends PipelineProvider

Original file line number	Diff line number	Diff line change
`@@ -31,4 +31,5 @@ dependencies {`
`31`	`31`	`BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:LabDevKitModules:LDK", depProjectConfig: "published", depExtension: "module")`
`32`	`32`	`BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "published", depExtension: "module")`
`33`	`33`	`BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:LabDevKitModules:laboratory", depProjectConfig: "published", depExtension: "module")`
	`34`	`+ BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:discvrcore", depProjectConfig: "published", depExtension: "module")`
`34`	`35`	`}`