DiscvrLabKeyModules/SequenceAnalysis/resources/views/sequenceAnalysisDetails.html at b14d3fe5f8f03cafc18c940d0bc3aa7d7c60430b · LabKey/DiscvrLabKeyModules · GitHub

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<script type="text/javascript" nonce="<%=scriptNonce%>">

Ext4.onReady(function (){
    var analysisId = LABKEY.ActionURL.getParameter('id');

    if (!analysisId){
        alert('Must Provide Analysis Id');
        return;
    }

        var webpart = <%=webpartContext%>;

        Ext4.get(webpart.wrapperDivId).update(
            '<div id="analysisDetails_'+webpart.wrapperDivId+'"></div>' +
            '<div style="margin-bottom: 10px;"></div>' +
            '<div id="sampleDetails_'+webpart.wrapperDivId+'"></div>' +
            '<div style="margin-bottom: 10px;"></div>' +
            //'<div id="analysisNav_'+webpart.wrapperDivId+'"></div>' +
            //'<br>' +
            '<div id="outputs_'+webpart.wrapperDivId+'"></div>' +
            '<div id="qualityMetrics_'+webpart.wrapperDivId+'"></div>' +
            '<div style="margin-bottom: 10px;"></div>' +
            '<div id="readsetDiv_'+webpart.wrapperDivId+'"/>'
        );

    Ext4.create('LDK.panel.DetailsPanel', {
        title: 'Analysis Run Details:',
        showBackBtn: false,
        renderTo: 'analysisDetails_'+webpart.wrapperDivId,
        store: {
            schemaName: 'sequenceanalysis',
            queryName: 'sequence_analyses',
            viewName: 'Detailed',
            filterArray: [LABKEY.Filter.create('rowid', analysisId, LABKEY.Filter.Types.EQUAL)]
        },
        detailsConfig: {
            buttons: [{
                text: 'More Actions',
                menu: [{
                    text: 'Edit Analysis Details',
                    href: LABKEY.ActionURL.buildURL('ldk', 'manageRecord', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_analyses', keyField: 'rowid', key: analysisId}) + '&returnUrl=' + LDK.Utils.getReturnUrl()
                }]
            }]
        }
    });

    LABKEY.Query.selectRows({
        schemaName: 'sequenceanalysis',
        queryName: 'sequence_analyses',
        columns: 'rowid,readset,runid,runid/name',
        filterArray: [LABKEY.Filter.create('rowid', analysisId, LABKEY.Filter.Types.EQUAL)],
        scope: this,
        successCallback: onSuccess
    });

    LDK.Utils.getReadOnlyQWP({
        title: 'Outputs',
        schemaName: 'sequenceanalysis',
        queryName: 'outputfiles',
        maxRows: 20,
        containerPath: Laboratory.Utils.getQueryContainerPath(),
        filterArray: [LABKEY.Filter.create('analysis_id', analysisId, LABKEY.Filter.Types.EQUAL)]
    }).render('outputs_'+webpart.wrapperDivId);

    LDK.Utils.getReadOnlyQWP({
        title: 'Quality Metrics',
        schemaName: 'sequenceanalysis',
        queryName: 'quality_metrics',
        maxRows: 20,
        containerPath: Laboratory.Utils.getQueryContainerPath(),
        columns: 'dataid,metricname,metricvalue,qualvalue,comment,workbook,readset,runid',
        filterArray: [LABKEY.Filter.create('analysis_id', analysisId, LABKEY.Filter.Types.EQUAL)]
    }).render('qualityMetrics_'+webpart.wrapperDivId);


    function onSuccess(data){
        if (!data.rows.length)
            return;

        var row = data.rows[0];
        if (row.readset){
            var panel = Ext4.create('LDK.panel.DetailsPanel', {
                title: 'Readset Details:',
                showBackBtn: false,
                renderTo: 'sampleDetails_' + webpart.wrapperDivId,
                store: {
                    containerPath: Laboratory.Utils.getQueryContainerPath(),
                    schemaName: 'sequenceanalysis',
                    queryName: 'sequence_readsets',
                    filterArray: [LABKEY.Filter.create('rowid', row.readset, LABKEY.Filter.Types.EQUAL)]
                },
                detailsConfig: {
                    buttons: [{
                        text: 'More Actions',
                        menu: [{
                            text: 'Edit Readset Details',
                            href: LABKEY.ActionURL.buildURL('ldk', 'manageRecord', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', keyField: 'rowid', key: row.readset}) + '&returnUrl=' + LDK.Utils.getReturnUrl()
                        }]
                    }]
                }
            });
        }

        if (row['runid/name']){
            LABKEY.Query.selectRows({
                schemaName: 'pipeline',
                queryName: 'job',
                containerPath: Laboratory.Utils.getQueryContainerPath(),
                columns: '*',
                filterArray: [LABKEY.Filter.create('description', row['runid/name'], LABKEY.Filter.Types.EQUAL)],
                scope: this,
                successCallback: function(results){
                    if(results && results.rows && results.rows[0]){
                        var jobId = results.rows[0].RowId;

                    }
                }
            });
        }
    }
});

</script>