From a0fa14e2148546504f568298226de88bfdffd71b Mon Sep 17 00:00:00 2001
From: Adam Rauch <adam@labkey.com>
Date: Thu, 2 Apr 2026 12:03:28 -0700
Subject: [PATCH] Remove unused JSP

---
 .gitattributes                                |  2 --
 .../ms2/pipeline/importMSScanCounts.jsp       | 36 -------------------
 2 files changed, 38 deletions(-)
 delete mode 100644 ms2/src/org/labkey/ms2/pipeline/importMSScanCounts.jsp

diff --git a/.gitattributes b/.gitattributes
index 983dc0af1..218f1d92c 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -653,7 +653,6 @@ ms2/src/org/labkey/ms2/pipeline/AbstractMS2SearchTaskFactory.java -text
 ms2/src/org/labkey/ms2/pipeline/ConfigureSequenceDB.jsp -text
 ms2/src/org/labkey/ms2/pipeline/FastaCheckTask.java -text
 ms2/src/org/labkey/ms2/pipeline/FastaCheckTaskFactorySettings.java -text
-ms2/src/org/labkey/ms2/pipeline/ImportScanCountsUpgradeJob.java -text
 ms2/src/org/labkey/ms2/pipeline/LibraProtocolFactory.java -text
 ms2/src/org/labkey/ms2/pipeline/MS2ImportPipelineJob.java -text
 ms2/src/org/labkey/ms2/pipeline/MS2PipelineForm.java -text
@@ -681,7 +680,6 @@ ms2/src/org/labkey/ms2/pipeline/comet/CometSearchProtocolFactory.java -text
 ms2/src/org/labkey/ms2/pipeline/comet/CometSearchTask.java -text
 ms2/src/org/labkey/ms2/pipeline/comet/LegacyCometRun.java -text
 ms2/src/org/labkey/ms2/pipeline/comet/setCometDefaults.jsp -text
-ms2/src/org/labkey/ms2/pipeline/importMSScanCounts.jsp -text
 ms2/src/org/labkey/ms2/pipeline/mascot/MascotCPipelineProvider.java -text
 ms2/src/org/labkey/ms2/pipeline/mascot/MascotClientImpl.java -text
 ms2/src/org/labkey/ms2/pipeline/mascot/MascotConfig.java -text
diff --git a/ms2/src/org/labkey/ms2/pipeline/importMSScanCounts.jsp b/ms2/src/org/labkey/ms2/pipeline/importMSScanCounts.jsp
deleted file mode 100644
index 5dbc13c6f..000000000
--- a/ms2/src/org/labkey/ms2/pipeline/importMSScanCounts.jsp
+++ /dev/null
@@ -1,36 +0,0 @@
-<%
-/*
- * Copyright (c) 2011-2019 LabKey Corporation
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-%>
-<%@ page import="org.labkey.api.data.ContainerManager" %>
-<%@ page import="org.labkey.api.pipeline.PipelineUrls" %>
-<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
-<%@ page extends="org.labkey.api.jsp.JspBase" %>
-<labkey:form method="post">
-    <table width="75%">
-        <tr>
-            <td>This upgrade will inspect all existing MS2 runs in the system. It will load MS scan counts for each fraction.
-                This is safe to run multiple times - only newly
-                discovered files will be added.
-                The upgrade task may be long running but will be
-                invoked as a pipeline job; you will be able to monitor progress and view log information from
-                the <a href="<%=h(urlProvider(PipelineUrls.class).urlBegin(ContainerManager.getRoot()))%>">pipeline status </a>page.</td>
-    </tr>
-    <tr><td>&nbsp;</td></tr>
-    <tr><td><%= button("Import Scan Counts").submit(true) %></td></tr>
-</table>
-</labkey:form>
-