Add attachment to Physical Exam dataset and ETL (#471)

Author: labkey-martyp

nirc_ehr/resources/queries/dbo/q_physicalExam.sql

@@ -9,7 +9,11 @@ SELECT anmEvt.ANIMAL_EVENT_ID as objectid,
        (CASE WHEN (anmEvt.DIAGNOSIS IS NOT NULL AND anmCmt.TEXT IS NOT NULL) THEN (anmEvt.DIAGNOSIS || ', ' || anmCmt.TEXT) WHEN (anmEvt.DIAGNOSIS IS NOT NULL AND anmCmt.TEXT IS NULL) THEN (anmEvt.DIAGNOSIS) ELSE (anmCmt.TEXT) END) AS remark,
        anmEvt.EVENT_ID.NAME AS exam,
        anmEvt.RESULT,
-       ev.NUMERIC_UNIT_ID                                                        AS Units
+       ev.NUMERIC_UNIT_ID                                                        AS Units,
+       CASE WHEN anmEvt.ATTACHMENT_PATH IS NOT NULL THEN
+           ('C:\Program Files\Labkey\labkey\files\NIRC\EHR\@files\attachments'
+                    || substring(anmEvt.ATTACHMENT_PATH, LENGTH('N:\'), LENGTH(anmEvt.ATTACHMENT_PATH)))
+       ELSE NULL END AS attachmentFile
 FROM ANIMAL_EVENT anmEvt
          LEFT JOIN ANIMAL anm ON anmEvt.ANIMAL_ID = anm.ANIMAL_ID
          LEFT JOIN ANIMAL_EVENT_COMMENT anmCmt ON anmEvt.ANIMAL_EVENT_ID = anmCmt.ANIMAL_EVENT_ID

nirc_ehr/resources/referenceStudy/study/datasets/datasets_metadata.xml

@@ -882,6 +882,11 @@
             <column columnName="remark">
                 <datatype>varchar</datatype>
             </column>
+            <column columnName="attachmentFile">
+                <columnTitle>Attachment File</columnTitle>
+                <datatype>varchar</datatype>
+                <rangeURI>http://cpas.fhcrc.org/exp/xml#fileLink</rangeURI>
+            </column>
         </columns>
     </table>
     <table tableName="prc" tableDbType="TABLE">

nirc_ehr/resources/schemas/dbscripts/postgresql/nirc_ehr-25.000-25.001.sql

@@ -0,0 +1 @@
+SELECT core.executeJavaUpgradeCode('reloadFolder');

nirc_ehr/src/org/labkey/nirc_ehr/NIRC_EHRModule.java

@@ -77,7 +77,7 @@ public String getName()
     @Override
     public @Nullable Double getSchemaVersion()
     {
-        return 25.000;
+        return 25.001;
     }
 
     @Override