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Clinical Procedures Overdue Notification (#481)
* Procedure Overdue notification
1 parent 065e32c commit 7709e8c

7 files changed

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‎nirc_ehr/resources/queries/study/prcOverdue.sql‎

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@@ -4,6 +4,7 @@ SELECT
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po.procedure,
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po.windowStart,
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po.windowEnd,
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timestampdiff('SQL_TSI_DAY', po.windowEnd, now()) as daysOverdue,
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po.orderedby,
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po.remark,
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po.objectid,

‎nirc_ehr/resources/queries/study/prcOverdue/.qview.xml‎

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@@ -7,15 +7,18 @@
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<column name="Id/curLocation/cage"/>
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<column name="date"/>
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<column name="procedure"/>
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<column name="orderedby"/>
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<column name="windowStart"/>
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<column name="windowEnd"/>
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<column name="daysOverdue"/>
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<column name="remark"/>
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<column name="status"/>
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</columns>
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<filters>
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<filter column="Id/Demographics/calculated_status" operator="eq" value="Alive"/>
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</filters>
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<sorts>
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<sort column="daysOverdue" descending="true"/>
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<sort column="status" descending="false"/>
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<sort column="Id/curLocation/room"/>
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<sort column="Id/curLocation/cage"/>

‎nirc_ehr/resources/queries/study/prcOverdueNotification.sql‎

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SELECT
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pod.Id,
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pod.Id.demographics.species.common_name AS species,
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pod.Id.curLocation.room.name AS room,
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pod.Id.curLocation.cage.cage AS cage,
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pod.procedure.name AS procedure,
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pod.orderedby.displayName AS orderedBy,
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pod.windowStart,
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pod.windowEnd,
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pod.daysOverdue,
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pod.remark,
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FROM prcOverdue pod
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ORDER BY pod.daysOverdue DESC

‎nirc_ehr/resources/queries/study/prcOverdueNotification/.qview.xml‎

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<customView xmlns="http://labkey.org/data/xml/queryCustomView">
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<sorts>
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<sort column="daysOverdue" descending="true"/>
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</sorts>
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</customView>

‎nirc_ehr/src/org/labkey/nirc_ehr/NIRC_EHRModule.java‎

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@@ -55,6 +55,7 @@
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import org.labkey.nirc_ehr.history.*;
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import org.labkey.nirc_ehr.notification.NIRCClinicalMoveNotification;
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import org.labkey.nirc_ehr.notification.NIRCDeathNotification;
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import org.labkey.nirc_ehr.notification.NIRCProcedureOverdueNotification;
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import org.labkey.nirc_ehr.query.NIRC_EHRUserSchema;
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import org.labkey.nirc_ehr.security.NIRCEHRVetTechRole;
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import org.labkey.nirc_ehr.table.NIRC_EHRCustomizer;
@@ -182,6 +183,7 @@ protected void doStartupAfterSpringConfig(ModuleContext moduleContext)
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registerDataEntry();
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NotificationService.get().registerNotification(new NIRCDeathNotification());
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NotificationService.get().registerNotification(new NIRCClinicalMoveNotification());
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NotificationService.get().registerNotification(new NIRCProcedureOverdueNotification());
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// Ensure N: is mounted if it's configured, as it's being mapped in via a symlink/shortcut, so we can't
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// recognize paths using it based solely on their drive letter and mount just-in-time

‎nirc_ehr/src/org/labkey/nirc_ehr/notification/NIRCProcedureOverdueNotification.java‎

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package org.labkey.nirc_ehr.notification;
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import org.jetbrains.annotations.Nullable;
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import org.labkey.api.data.Container;
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import org.labkey.api.data.TableInfo;
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import org.labkey.api.data.TableSelector;
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import org.labkey.api.ehr.notification.AbstractEHRNotification;
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import org.labkey.api.query.QueryService;
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import org.labkey.api.query.UserSchema;
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import org.labkey.api.security.User;
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import org.labkey.api.settings.AppProps;
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import java.util.Date;
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import java.util.List;
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import java.util.Set;
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public class NIRCProcedureOverdueNotification extends AbstractEHRNotification
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{
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@Override
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public String getName()
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{
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return "NIRC Procedure Overdue Notification";
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}
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@Override
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public String getScheduleDescription()
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{
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return "Weekly on Friday at 8:00 AM";
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}
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@Override
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public String getCronString()
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{
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return "0 0 8 ? * 6";
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}
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@Override
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public @Nullable String getMessageBodyHTML(Container c, User u)
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{
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List<ProcedureOverdue> procsOverdueList = getOverDueProcedures(c, u);
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StringBuilder html = new StringBuilder();
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html.append("<html>");
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if (!procsOverdueList.isEmpty())
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{
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html.append("<h4>Animals with overdue procedures</h4>");
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appendTableHtml(c, html, procsOverdueList);
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}
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else
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{
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html.append("<h4>No overdue procedures</h4>");
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}
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html.append("<br/>");
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String procOverdueReportLink = AppProps.getInstance().getBaseServerUrl() + AppProps.getInstance().getContextPath() + c.getPath() + "/query-executeQuery.view?schemaName=study&query.queryName=prcOverdue";
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html.append("<a href='").append(procOverdueReportLink).append("'>");
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html.append("Click here to view Overdue Procedures report with additional actions.</a>");
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html.append("</html>");
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return html.toString();
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}
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private void appendTableHtml(Container c, StringBuilder html, List<ProcedureOverdue> procedureOverdueList)
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{
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html.append("<table style=\"border-collapse: collapse;\">");
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html.append("<tr>");
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html.append(NotificationHelper.getNotificationGridCellHeader(c, ("Id")));
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html.append(NotificationHelper.getNotificationGridCellHeader(c, ("Species")));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Room"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Cage"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Procedure"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Ordered By"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Window Start"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Window End"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Days Overdue"));
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html.append(NotificationHelper.getNotificationGridCellHeader(c,"Remark"));
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html.append("</tr>");
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for (int i = 0; i < procedureOverdueList.size(); i++)
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{
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ProcedureOverdue pod = procedureOverdueList.get(i);
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String bgColor = i % 2 == 0 ? "#f2f2f2" : "#fff";
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html.append("<tr style=\"background-color:").append(bgColor).append("\">");
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getId(), null, false, true, false));
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getSpecies()));
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getRoom()));
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getCage()));
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getProcedure()));
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getOrderedBy()));
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html.append(NotificationHelper.getNotificationGridCell(c, NotificationHelper.getFormattedDate(c, pod.getWindowStart())));
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html.append(NotificationHelper.getNotificationGridCell(c, NotificationHelper.getFormattedDate(c, pod.getWindowEnd())));
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html.append(NotificationHelper.getNotificationGridCell(c, String.valueOf(pod.getDaysOverdue())));
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html.append(NotificationHelper.getNotificationGridCell(c, pod.getRemark()));
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html.append("</tr>");
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}
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html.append("</table>");
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}
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private List<ProcedureOverdue> getOverDueProcedures(Container c, User u) throws IllegalStateException
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{
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UserSchema userSchema = QueryService.get().getUserSchema(u, c, "study");
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TableInfo tableInfo = userSchema.getTable("prcOverdueNotification", null);
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if (null == tableInfo)
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{
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throw new IllegalStateException("Expected 'prcOverdueNotification' query for the 'NIRC Procedure Overdue' notification");
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}
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TableSelector tableSelector = new TableSelector(tableInfo, Set.of("Id", "species", "room", "cage", "procedure", "orderedBy", "windowStart", "windowEnd", "daysOverdue", "remark"));
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return tableSelector.getArrayList(ProcedureOverdue.class);
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}
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@Override
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public String getDescription()
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{
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return "Weekly notification sent Friday morning for animals with procedures past the scheduled window";
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}
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@Override
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public String getEmailSubject(Container c)
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{
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return "Procedure overdue notification";
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}
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public static class ProcedureOverdue
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{
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public String Id;
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public String species;
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public String room;
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public String cage;
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public String cageObjectId;
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public String procedure;
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public String orderedBy;
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public Date windowStart;
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public Date windowEnd;
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public int daysOverdue;
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public String remark;
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public String getId()
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{
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return Id;
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}
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public void setId(String id)
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{
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Id = id;
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}
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public String getSpecies()
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{
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return species;
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}
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public void setSpecies(String species)
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{
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this.species = species;
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}
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public String getRoom()
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{
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return room;
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}
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public void setRoom(String room)
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{
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this.room = room;
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}
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public String getCage()
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{
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return cage;
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}
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public void setCage(String cage)
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{
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this.cage = cage;
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}
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public String getCageObjectId()
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{
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return cageObjectId;
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}
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public void setCageObjectId(String cageObjectId)
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{
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this.cageObjectId = cageObjectId;
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}
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public String getProcedure()
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{
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return procedure;
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}
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public void setProcedure(String procedure)
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{
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this.procedure = procedure;
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}
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public String getOrderedBy()
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{
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return orderedBy;
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}
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public void setOrderedBy(String orderedBy)
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{
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this.orderedBy = orderedBy;
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}
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public Date getWindowStart()
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{
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return windowStart;
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}
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public void setWindowStart(Date windowStart)
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{
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this.windowStart = windowStart;
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}
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public Date getWindowEnd()
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{
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return windowEnd;
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}
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public void setWindowEnd(Date windowEnd)
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{
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this.windowEnd = windowEnd;
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}
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public int getDaysOverdue()
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{
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return daysOverdue;
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}
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public void setDaysOverdue(int daysOverdue)
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{
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this.daysOverdue = daysOverdue;
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}
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public String getRemark()
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{
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return remark;
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}
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public void setRemark(String remark)
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{
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this.remark = remark;
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}
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}
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}

‎nirc_ehr/src/org/labkey/nirc_ehr/notification/NotificationHelper.java‎

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package org.labkey.nirc_ehr.notification;
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import jakarta.annotation.Nullable;
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import org.labkey.api.data.Container;
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import org.labkey.api.settings.AppProps;
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import org.labkey.api.settings.LookAndFeelProperties;
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import org.labkey.api.util.PageFlowUtil;
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import java.text.SimpleDateFormat;
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import java.util.Date;
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public class NotificationHelper
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{
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private static final String NOTIFICATION_GRID_TD_STYLE = "padding: 5px; vertical-align: top; border: 1px solid #000000;";
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public static String getNotificationGridCell(Container c, String value, @Nullable String additionalStyle, boolean isHeader, boolean isId, boolean unsafePassThru)
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{
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String formattedValue = PageFlowUtil.filter(value);
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if (unsafePassThru)
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{
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formattedValue = value;
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}
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if (isId)
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{
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String idLink = AppProps.getInstance().getBaseServerUrl() +
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AppProps.getInstance().getContextPath() +
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c.getPath() +
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"/ehr-participantView.view?participantId=" + formattedValue +
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"&inputType:singleSubject&showReport:0&activeReport:snapshot";
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formattedValue = "<a href=\"" + idLink + "\">" + formattedValue + "</a>";
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}
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if (isHeader)
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{
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return "<th style=\"" + NOTIFICATION_GRID_TD_STYLE + additionalStyle + "\"><b>" + formattedValue + "</b></th>";
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}
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else
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{
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return "<td style=\"" + NOTIFICATION_GRID_TD_STYLE + additionalStyle + "\">" + formattedValue + "</td>";
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}
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}
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public static String getNotificationGridCell(Container c, String value)
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{
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return getNotificationGridCell(c, value, null, false, false, false);
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}
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public static String getNotificationGridCellHeader(Container c, String value)
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{
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return getNotificationGridCell(c, value, null, true, false, false);
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}
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public static String getFormattedDate(Container c, Date date)
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{
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SimpleDateFormat dateFormat = new SimpleDateFormat(LookAndFeelProperties.getInstance(c).getDefaultDateFormat());
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return dateFormat.format(date);
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}
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}

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