Added MHC Data Pivot report (#451)

* Added pivot query for MHC data

* added MHC Pivot to Browse All Data

* tweaked metadata

Author: spamhurts

snprc_ehr/resources/queries/snprc_ehr/MhcDataPivot.query.xml

@@ -0,0 +1,30 @@
+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="MhcDataPivot" tableDbType="NOT_IN_DB" useColumnOrder="true">
+                <tableUrl />
+                <insertUrl />
+                <importUrl />
+                <updateUrl />
+                <deleteUrl />
+                <columns>
+                    <column columnName="Id">
+                        <fk>
+                            <fkDbSchema>study</fkDbSchema>
+                            <fkTable>Animal</fkTable>
+                            <fkColumnName>Id</fkColumnName>
+                        </fk>
+                    </column>
+                    <column columnName="OcId">
+                        <columnTitle>OC ID</columnTitle>
+                        <isHidden>true</isHidden>
+                    </column>
+                    <column columnName="DataFileSource">
+                        <columnTitle>Data File Source</columnTitle>
+                        <isHidden>true</isHidden>
+                    </column>
+                </columns>
+            </table>
+        </tables>
+    </metadata>
+</query>

snprc_ehr/resources/queries/snprc_ehr/MhcDataPivot.sql

@@ -0,0 +1,25 @@
+SELECT
+    b.Id,
+    b.Haplotype,
+    b.Ocid,
+    b.DataFileSource,
+    b.modified,
+    group_concat(b.MhcValue) as MhcValue
+
+FROM (
+         SELECT
+             b.Id,
+             b.Haplotype,
+             b.Ocid,
+             b.MhcValue,
+             b.DataFileSource,
+             b.Modified
+         FROM snprc_ehr.MhcData as b
+         ) as b
+
+GROUP BY b.id, b.ocid, b.DataFileSource, b.haplotype, b.modified
+
+PIVOT MhcValue BY Haplotype IN
+(select distinct Haplotype from snprc_ehr.MhcData order by Haplotype
+
+)

snprc_ehr/resources/queries/study/BrowseDataSets.sql

@@ -45,6 +45,8 @@ select 'study' as schema, 'Colony Management' as CategoryId,'Animal Accounts & G
 UNION
 select 'snprc_ehr' as schema, 'Misc' as CategoryId,'MHC Data' as Label, 'MhcData' as Name,  true as ShowByDefault, true as isAnimal
 UNION
+select 'snprc_ehr' as schema, 'Misc' as CategoryId,'MHC Pivot' as Label, 'MhcDataPivot' as Name,  true as ShowByDefault, true as isAnimal
+UNION
 select 'study' as schema, 'Clinical' as CategoryId,'Daily Observations' as Label, 'DailyObs' as Name,  true as ShowByDefault, true as isAnimal
 UNION
 select 'study' as schema, 'Clinical' as CategoryId,'Daily Cycles' as Label, 'CycleDaily' as Name,  true as ShowByDefault, true as isAnimal