LongHashSet structural search/replace

Author: labkey-matthewb

src/org/labkey/targetedms/SkylineDocImporter.java

@@ -23,6 +23,7 @@
 import org.jetbrains.annotations.NotNull;
 import org.jetbrains.annotations.Nullable;
 import org.labkey.api.collections.CaseInsensitiveHashMap;
+import org.labkey.api.collections.LongArrayList;
 import org.labkey.api.collections.LongHashMap;
 import org.labkey.api.data.CompareType;
 import org.labkey.api.data.Container;
@@ -693,7 +694,7 @@ private void deleteOldSampleFiles(ReplicateInfo replicateInfo)
         _log.debug("Found data for the following old sample files in the QC folder:");
         replicateInfo.oldSamplesToDelete.keySet().forEach(key -> _log.debug(String.format("  %s", key)));
 
-        List<Long> existingSamples = new ArrayList<>(total);
+        List<Long> existingSamples = new LongArrayList(total);
         replicateInfo.oldSamplesToDelete.forEach((key, value) -> value.forEach(existingSample -> existingSamples.add(existingSample.getId())));
 
         List<String> srcFiles = TargetedMSManager.deleteSampleFilesAndDependencies(existingSamples);

src/org/labkey/targetedms/TargetedMSController.java

@@ -73,6 +73,7 @@
 import org.labkey.api.attachments.SvgSource;
 import org.labkey.api.audit.AuditLogService;
 import org.labkey.api.audit.provider.SiteSettingsAuditProvider;
+import org.labkey.api.collections.LongArrayList;
 import org.labkey.api.collections.LongHashMap;
 import org.labkey.api.data.CompareType;
 import org.labkey.api.data.Container;
@@ -6312,8 +6313,8 @@ public void setSelectedInputValues(String selectedInputValues)
             if(!StringUtils.isBlank(selectedInputValues))
             {
                 String[] vals = selectedInputValues.split(",");
-                _selectedIds = new ArrayList<>(vals.length);
-                _deselectedIds = new ArrayList<>(vals.length);
+                _selectedIds = new LongArrayList(vals.length);
+                _deselectedIds = new LongArrayList(vals.length);
 
                 for(String value: vals)
                 {

src/org/labkey/targetedms/query/PeptideGroupManager.java

@@ -17,6 +17,7 @@
 
 
 import org.apache.commons.lang3.StringUtils;
+import org.labkey.api.collections.LongArrayList;
 import org.labkey.api.data.Container;
 import org.labkey.api.data.SQLFragment;
 import org.labkey.api.data.SimpleFilter;
@@ -174,7 +175,7 @@ public static void updateStatusToDeprecatedOrNotRepresentative(long[] peptideGro
     {
         if(peptideGroupIds == null || peptideGroupIds.length == 0)
             return;
-        List<Long> peptideGroupIdList = new ArrayList<>(peptideGroupIds.length);
+        List<Long> peptideGroupIdList = new LongArrayList(peptideGroupIds.length);
         for(int i = 0; i < peptideGroupIds.length; i++)
         {
             peptideGroupIdList.add(peptideGroupIds[i]);