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<!DOCTYPE html>
<html>
<head>
<title>Lars Berling</title>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" type="text/css" href="css/style.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.5.1/css/all.min.css">
</head>
<body class="dark-mode">
<div class="page-wrapper">
<header>
<div class="header-content">
<!-- Night Mode Toggle Button -->
<button id="mode-toggle" aria-label="Toggle Night Mode" class="night-mode-btn">
<i class="fas fa-moon"></i>
</button>
</div>
</header>
<!-- Container for the left panel and right panel -->
<div class="container">
<!-- Left Panel: Circular image and title -->
<div class="left-panel">
<img src="assets/images/PicLB.jpg" alt="Lars Berling" class="profile-image">
<div class="name-block">
<h3>Lars Berling</h3>
<p class="subtitle">Postdoctoral Fellow</p>
</div>
<ul class="left-panel-links">
<li><a href="https://www.sfu.ca" target="_blank">Simon Fraser University</a></li>
<li><a href="https://www.sfu.ca/magpie.html" target="_blank">MAGPIE Group</a></li>
<li><a href="https://www.sfu.ca/math/people/faculty/ccolijn/" target="_blank">Caroline Colijn</a></li>
</ul>
<!-- Social Links (Now Below the First List) -->
<div class="social-links">
<ul>
<li>
<a href="mailto:lars_berling@sfu.ca">
<i class="fas fa-envelope"></i>
</a>
</li>
<li>
<a href="https://github.com/Lars-B" target="_blank">
<i class="fab fa-github"></i>
</a>
</li>
<li>
<a href="https://scholar.google.com/citations?hl=de&user=8mvOP90AAAAJ" target="_blank">
<i class="fas fa-graduation-cap"></i>
</a>
</li>
<li>
<a href="https://orcid.org/0000-0002-1303-0669" target="_blank">
<i class="fab fa-orcid"></i>
</a>
</li>
</ul>
</div>
<div>
<p>© 2025 Lars Berling.</p>
</div>
</div>
<div class="right-panel">
<!-- Navigation for tabs -->
<nav>
<a href="#home" class="active">Home</a>
<a href="#publications">Publications</a>
<a href="#software">Software</a>
<a href="#talks">Talks</a>
</nav>
<!-- Home Section -->
<section id="home" class="tab-content active">
<div class="main-section">
<h2>Welcome to my website!</h2>
<p>Thanks for stopping by. Take a look around and learn more about me and what I do.</p>
<p>
I develop methods and software in the area of phylogenetics.<br>
My work has focused on understanding distributions of phylogenetic time trees.<br>
A major goal of this work is to improve the way phylogenetic inference of trees is performed,<br>
particularly in the context of BEAST2 but applicable to all tree inference software.
</p>
</div>
<div class="main-section">
<h3>Interests and Areas of Study</h3>
<ul class="info-list">
<li>Phylogenetic trees and metrics</li>
<li>MCMC convergence assessment</li>
<li>Phylogenetic inference</li>
<li>Computational Biology</li>
</ul>
</div>
<div class="main-section">
<h3>Short CV</h3>
<ul class="info-list">
<li>Post-doctoral fellow, <a class="mylink", href="https://www.sfu.ca/magpie.html">Magpie Group</a>, Simon Fraser University, Canada (2025-...)</li>
<li>PhD, <a class="mylink" href="https://www.canterbury.ac.nz/study/academic-study/engineering/schools-and-departments-engineering-forestry-product-design/school-of-mathematics-and-statistics">Mathematics</a>, University of Canterbury, New Zealand (2021-2024)</li>
<li>Master of Science, <a class="mylink" href="https://mnf.uni-greifswald.de/en/student-portal/mint-compartments-in-greifswald/biomathematics/" target="_blank">Biomathematics</a>, University of Greifswald, Germany (...-2021)</li>
<li>Bachelor of Science, <a class="mylink" href="https://mnf.uni-greifswald.de/en/student-portal/mint-compartments-in-greifswald/biomathematics/" target="_blank">Biomathematics</a>, University of Greifswald, Germany (2014-2017)</li>
</ul>
</div>
</section>
<section id="software" class="tab-content">
<div class="main-section">
<h2>Software</h2>
<div class="software-list">
<ul>
<li class="software-item">
<a href="https://github.com/bioDS/tetres" target="_blank" class="software-link">
<i class="fab fa-github"></i> tetres Python package (GitHub)
</a>
</li>
<li class="software-item">
<a href="https://github.com/rbouckaert/asm" target="_blank" class="software-link">
<i class="fab fa-github"></i> BEAST2 ASM package (GitHub)
</a>
</li>
<li class="software-item">
<a href="https://github.com/CompEvol/CCD" target="_blank" class="software-link">
<i class="fab fa-github"></i> BEAST2 CCD package (GitHub)
</a>
</li>
</ul>
</div>
<h2>Other links</h2>
<div class="software-list">
<ul>
<li class="software-item">
<a href="https://github.com/Lars-B/tetres-tutorials" target="_blank" class="software-link">
<i class="fab fa-github"></i> tetres tutorials
</a>
</li>
<li class="software-item">
<a href="https://www.beast2.org/2025/02/25/CCD0-revisited.html" target="_blank" class="software-link">
<i class="fa fa-pencil"></i> CCD0 revisited (BEAST2 Blog)
</a>
</li>
<li class="software-item">
<a href="https://www.beast2.org/2024/06/24/what-is-new-in-v2.7.7.html" target="_blank" class="software-link">
<i class="fa fa-pencil"></i> CCD package recommended for TreeAnnotator with BEAST v2.7.7 (BEAST2 Blog)
</a>
</li>
<li class="software-item">
<a href="https://www.beast2.org/2024/08/01/automatic-stopping-mcmc.html" target="_blank" class="software-link">
<i class="fas fa-pencil"></i> Automatic stopping MCMC (BEAST2 Blog)
</a>
</li>
</ul>
</div>
</div>
</section>
<section id="publications" class="tab-content">
<div class="main-section">
<h2>Publications</h2>
<div class="publication-list">
<ul id="publications-list">Loading publications...</ul>
</div>
</div>
</section>
<section id="talks" class="tab-content">
<div style="display: flex; flex-direction: column; gap: 2rem; max-width: 900px; margin: auto;">
<!-- ========== Workshop 1 ========== -->
<div style="border: 1px solid #ccc; padding: 1rem; border-radius: 8px;">
<h3 style="margin: 0 0 0.5rem 0;">
Banff Workshop - Novel Mathematical Paradigm for Phylogenomics - August 2025
<a href="https://www.birs.ca/events/2025/5-day-workshops/25w5333"
target="_blank"
style="font-size: 0.9rem; margin-left: 0.5rem;">
(Workshop Website)
</a>
</h3>
<embed src="assets/pdfs/banff.pdf"
type="application/pdf"
width="100%"
height="300px"
style="border: 1px solid #ddd; border-radius: 4px;" />
<div style="margin-top: 0.5rem;">
<a href="assets/pdfs/banff.pdf" download="banff.pdf"
style="display: inline-block; background: #007acc; color: white; padding: 0.5rem 1rem; border-radius: 4px; text-decoration: none;">
Download Slides
</a>
</div>
</div>
<!-- ========== Workshop 2 ========== -->
<!--<div style="border: 1px solid #ccc; padding: 1rem; border-radius: 8px;">
<h3 style="margin: 0 0 0.5rem 0;">
Vienna Workshop — Sept 2025
<a href="https://another-workshop.example" target="_blank" style="font-size: 0.9rem; margin-left: 0.5rem;">
(Workshop Website)
</a>
</h3>
<embed src="assets/pdfs/kaikoura.pdf"
type="application/pdf"
width="100%"
height="300px"
style="border: 1px solid #ddd; border-radius: 4px;" />
<div style="margin-top: 0.5rem;">
<a href="assets/pdfs/kaikoura.pdf" download="kaikoura.pdf"
style="display: inline-block; background: #007acc; color: white; padding: 0.5rem 1rem; border-radius: 4px; text-decoration: none;">
Download Slides
</a>
</div>
</div>-->
</div>
<!-- <h2>Slides & PDFs</h2>-->
<!-- TODO Need to figure out how to do this list, do I want previews or not??? -->
<!-- <p>Here is a collection of talks I gave in the past:</p>-->
<!-- <ul class="pdf-list">-->
<!-- <li class="pdf-item" data-pdf="assets/pdfs/kaikoura.pdf">-->
<!-- <a href="assets/pdfs/kaikoura.pdf" target="_blank" class="pdf-link">-->
<!-- <div class="pdf-info">-->
<!-- <i class="fas fa-file-pdf"></i> Slide 1: Title of Presentation 1-->
<!-- </div>-->
<!-- </a>-->
<!-- </li>-->
<!-- <li class="pdf-item" data-pdf="assets/pdfs/kaikoura.pdf">-->
<!-- <a href="assets/pdfs/kaikoura.pdf" target="_blank" class="pdf-link">-->
<!-- <div class="pdf-info">-->
<!-- <i class="fas fa-file-pdf"></i> Slide 1: Title of Presentation 1-->
<!-- </div>-->
<!-- </a>-->
<!-- </li>-->
<!-- <!– Add more items here –>-->
<!-- </ul>-->
</section>
</div>
</div>
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<script src="js/control-tab-switch.js"></script>
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</body>
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