copied basic sphinx docs for MDA from MDAnalysis and PMDA

Author: orbeckst

docs/Makefile

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+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS    =
+SPHINXBUILD   = sphinx-build
+SPHINXPROJ    = MDAnalysisData
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/_static/custom.css

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+/* override css for readable.css */
+
+/*  styles/fonts to match http://mdanalysis.org (see public/css) */
+/* MDAnalysis orange: #FF9200 */
+/* MDAnalysis gray: #808080 */
+/* MDAnalysis white: #FFFFFF */
+/* MDAnalysis black: #000000 */
+
+@import url('readable.css');
+
+/* -- page layout --------------------------------------------------------- */
+
+body {
+    font-family: 'PT Sans', Helvetica, Arial, 'sans-serif';
+    font-size: 17px;    
+}
+
+div.body {
+    color: #000000;
+}
+
+div.sphinxsidebar a:hover {
+    color: #FF9200;
+}
+
+div.sphinxsidebar p {
+    color: #808080;
+}
+
+
+/* -- body styles --------------------------------------------------------- */
+
+a {
+    color: #FF9200;
+    text-decoration: none;
+}
+
+a:visited {
+    color: #FF9200;
+}
+ 
+a:hover {
+    color: #FF9200;
+    text-decoration: underline;
+}
+
+
+pre, tt, code {
+    font-family: Menlo, Monaco, 'Courier New', monospace
+}
+
+
+div.body h1 {
+    font-weight: bolder;
+}
+
+a.headerlink {
+    color: #808080;
+    font-size: 0.8em;
+    padding: 0 4px 0 4px;
+    text-decoration: none;
+}
+ 
+a.headerlink:hover {
+    background-color: #808080;
+    color: #fff;
+}
+
+
+div.admonition {
+    margin: 10px 0px;
+    padding: 10px 10px;
+}
+
+div.admonition p.admonition-title {
+    font-size: 100%;
+    font-weight: bolder;
+}

docs/_static/logos/AUTHOR

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+The MDAnalysis 'Atom' logo was created by Christian Beckstein and is
+
+Copyright (c) 2011 Christian Beckstein
+
+MDAnalysis Logo 'Atom' by Christian Beckstein is licensed under a
+Creative Commons Attribution-NoDerivs 3.0 Unported License.
+To view a copy of this license, visit
+http://creativecommons.org/licenses/by-nd/3.0/ or send a letter to Creative
+Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
+
+The logo is contained in the file 'mdanalysis-logo.png'.
+
+Derivatives in the files 'mdanalysis-logo-127x55.png',
+'mdanalysis-logo-200x150.png', 'mdanalysis-logo.ico' were created for
+inclusion in MDAnalysis and on websites related to MDAnalysis. They
+are distributed under the same license as the 'Atom' logo.