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Merge pull request #26 from colin-combe/master
update
2 parents f80bf4d + 3bb59ed commit 382458d

15 files changed

Lines changed: 2684 additions & 377 deletions

‎data/CPX-1924.json‎

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‎data/CPX-5605.json‎

Lines changed: 68 additions & 72 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@
22
"data": [
33
{
44
"object": "interactor",
5-
"id": "uniprotkb_P01024-PRO_0000005911",
6-
"sequence": "SNLDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN",
5+
"id": "uniprotkb_P27918",
6+
"sequence": "MITEGAQAPRLLLPPLLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEEL",
77
"type": {
88
"id": "MI:0326",
99
"name": "protein"
@@ -15,9 +15,28 @@
1515
},
1616
"identifier": {
1717
"db": "uniprotkb",
18-
"id": "P01024-PRO_0000005911"
18+
"id": "P27918"
1919
},
20-
"label": "p01024-pro_0000005911"
20+
"label": "CFP"
21+
},
22+
{
23+
"object": "interactor",
24+
"id": "uniprotkb_P00751-PRO_0000027547",
25+
"sequence": "KIVLDPSGSMNIYLVLDGSDSIGASNFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGFL",
26+
"type": {
27+
"id": "MI:0326",
28+
"name": "protein"
29+
},
30+
"organism": {
31+
"taxid": "9606",
32+
"common": "human",
33+
"scientific": "Homo sapiens"
34+
},
35+
"identifier": {
36+
"db": "uniprotkb",
37+
"id": "P00751-PRO_0000027547"
38+
},
39+
"label": "P00751-PRO_0000027547"
2140
},
2241
{
2342
"object": "interactor",
@@ -36,7 +55,26 @@
3655
"db": "uniprotkb",
3756
"id": "P01024-PRO_0000005908"
3857
},
39-
"label": "p01024-pro_0000005908"
58+
"label": "P01024-PRO_0000005908"
59+
},
60+
{
61+
"object": "interactor",
62+
"id": "uniprotkb_P01024-PRO_0000005911",
63+
"sequence": "SNLDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN",
64+
"type": {
65+
"id": "MI:0326",
66+
"name": "protein"
67+
},
68+
"organism": {
69+
"taxid": "9606",
70+
"common": "human",
71+
"scientific": "Homo sapiens"
72+
},
73+
"identifier": {
74+
"db": "uniprotkb",
75+
"id": "P01024-PRO_0000005911"
76+
},
77+
"label": "P01024-PRO_0000005911"
4078
},
4179
{
4280
"object": "interaction",
@@ -59,10 +97,6 @@
5997
"scientific": "Homo sapiens"
6098
},
6199
"identifiers": [
62-
{
63-
"db": "matrixdb",
64-
"id": "MULT_84_human"
65-
},
66100
{
67101
"db": "wwpdb",
68102
"id": "5fo7"
@@ -71,14 +105,14 @@
71105
"db": "wwpdb",
72106
"id": "3g6j"
73107
},
74-
{
75-
"db": "wwpdb",
76-
"id": "2i07"
77-
},
78108
{
79109
"db": "reactome",
80110
"id": "R-HSA-166832"
81111
},
112+
{
113+
"db": "matrixdb",
114+
"id": "MULT_84_human"
115+
},
82116
{
83117
"db": "complex portal",
84118
"id": "CPX-973"
@@ -91,7 +125,7 @@
91125
"participants": [
92126
{
93127
"id": "1",
94-
"interactorRef": "uniprotkb_P01024-PRO_0000005911",
128+
"interactorRef": "uniprotkb_P01024-PRO_0000005908",
95129
"stoichiometry": "1",
96130
"bioRole": {
97131
"id": "MI:0499",
@@ -100,7 +134,7 @@
100134
"features": [
101135
{
102136
"id": "2",
103-
"name": "C3 beta chain binding region",
137+
"name": "C3b alpha(prime) chain binding region",
104138
"category": "bindingSites",
105139
"type": {
106140
"id": "MI:0117",
@@ -109,7 +143,7 @@
109143
"sequenceData": [
110144
{
111145
"pos": "?-?",
112-
"interactorRef": "uniprotkb_P01024-PRO_0000005911",
146+
"interactorRef": "uniprotkb_P01024-PRO_0000005908",
113147
"participantRef": "1"
114148
}
115149
],
@@ -121,7 +155,7 @@
121155
},
122156
{
123157
"id": "4",
124-
"interactorRef": "uniprotkb_P01024-PRO_0000005908",
158+
"interactorRef": "uniprotkb_P01024-PRO_0000005911",
125159
"stoichiometry": "1",
126160
"bioRole": {
127161
"id": "MI:0499",
@@ -130,7 +164,7 @@
130164
"features": [
131165
{
132166
"id": "3",
133-
"name": "C3b alpha(prime) chain binding region",
167+
"name": "C3 beta chain binding region",
134168
"category": "bindingSites",
135169
"type": {
136170
"id": "MI:0117",
@@ -139,7 +173,7 @@
139173
"sequenceData": [
140174
{
141175
"pos": "?-?",
142-
"interactorRef": "uniprotkb_P01024-PRO_0000005908",
176+
"interactorRef": "uniprotkb_P01024-PRO_0000005911",
143177
"participantRef": "4"
144178
}
145179
],
@@ -151,25 +185,6 @@
151185
}
152186
]
153187
},
154-
{
155-
"object": "interactor",
156-
"id": "uniprotkb_P00751-PRO_0000027547",
157-
"sequence": "KIVLDPSGSMNIYLVLDGSDSIGASNFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGFL",
158-
"type": {
159-
"id": "MI:0326",
160-
"name": "protein"
161-
},
162-
"organism": {
163-
"taxid": "9606",
164-
"common": "human",
165-
"scientific": "Homo sapiens"
166-
},
167-
"identifier": {
168-
"db": "uniprotkb",
169-
"id": "P00751-PRO_0000027547"
170-
},
171-
"label": "p00751-pro_0000027547"
172-
},
173188
{
174189
"object": "interaction",
175190
"id": "complex portal_CPX-5601",
@@ -191,6 +206,10 @@
191206
"scientific": "Homo sapiens"
192207
},
193208
"identifiers": [
209+
{
210+
"db": "intenz",
211+
"id": "3.4.21.47"
212+
},
194213
{
195214
"db": "reactome",
196215
"id": "R-HSA-173749"
@@ -199,10 +218,6 @@
199218
"db": "complex portal",
200219
"id": "CPX-5601"
201220
},
202-
{
203-
"db": "intenz",
204-
"id": "3.4.21.47"
205-
},
206221
{
207222
"db": "intact",
208223
"id": "EBI-25436732"
@@ -211,43 +226,24 @@
211226
"participants": [
212227
{
213228
"id": "5",
214-
"interactorRef": "complex portal_CPX-973",
229+
"interactorRef": "uniprotkb_P00751-PRO_0000027547",
215230
"stoichiometry": "1",
216231
"bioRole": {
217-
"id": "MI:0499",
218-
"name": "unspecified role"
232+
"id": "MI:0501",
233+
"name": "enzyme"
219234
}
220235
},
221236
{
222237
"id": "6",
223-
"interactorRef": "uniprotkb_P00751-PRO_0000027547",
238+
"interactorRef": "complex portal_CPX-973",
224239
"stoichiometry": "1",
225240
"bioRole": {
226-
"id": "MI:0501",
227-
"name": "enzyme"
241+
"id": "MI:0499",
242+
"name": "unspecified role"
228243
}
229244
}
230245
]
231246
},
232-
{
233-
"object": "interactor",
234-
"id": "uniprotkb_P27918",
235-
"sequence": "MITEGAQAPRLLLPPLLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEEL",
236-
"type": {
237-
"id": "MI:0326",
238-
"name": "protein"
239-
},
240-
"organism": {
241-
"taxid": "9606",
242-
"common": "human",
243-
"scientific": "Homo sapiens"
244-
},
245-
"identifier": {
246-
"db": "uniprotkb",
247-
"id": "P27918"
248-
},
249-
"label": "prop_human"
250-
},
251247
{
252248
"object": "interaction",
253249
"id": "complex portal_CPX-5605",
@@ -285,9 +281,8 @@
285281
"participants": [
286282
{
287283
"id": "7",
288-
"interactorRef": "complex portal_CPX-973",
289-
"minStoichiometry": "1",
290-
"maxStoichiometry": "5",
284+
"interactorRef": "uniprotkb_P27918",
285+
"stoichiometry": "2",
291286
"bioRole": {
292287
"id": "MI:0499",
293288
"name": "unspecified role"
@@ -305,8 +300,9 @@
305300
},
306301
{
307302
"id": "9",
308-
"interactorRef": "uniprotkb_P27918",
309-
"stoichiometry": "2",
303+
"interactorRef": "complex portal_CPX-973",
304+
"minStoichiometry": "1",
305+
"maxStoichiometry": "5",
310306
"bioRole": {
311307
"id": "MI:0499",
312308
"name": "unspecified role"

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