remove some comments

Author: colin-combe

src/js/viz/interactor/annotation.js

@@ -1,6 +1,5 @@
 export class Annotation {
     constructor(annotationName, seqDatum) {
-        // console.log("**", annotationName, seqDatum);
         this.description = annotationName.trim();
         this.seqDatum = seqDatum;
     }

src/js/viz/interactor/complex.js

@@ -13,21 +13,6 @@ export class Complex extends Interactor {
         this.upperGroup = document.createElementNS(svgns, "g");
         this.initLabel();
         this.padding = 28;
-
-        // const self = this;
-        // // its bad if you end up with these getting called
-        // Object.defineProperty(this, "width", {
-        //     get: function height() {
-        //         return self.naryLink.path.getBBox().width;
-        //         //return 160;
-        //     }
-        // });
-        // Object.defineProperty(this, "height", {
-        //     get: function height() {
-        //         return self.naryLink.path.getBBox().height;
-        //         //return 160;
-        //     }
-        // });
     }
 
     initLink(naryLink) {
@@ -36,15 +21,14 @@ export class Complex extends Interactor {
     }
 
     setLinked() {
-
         this.naryLink.path2.classList.add("linked-complex");
     }
 
     getPosition(originPoint) {
-        let mapped = this.naryLink.mapped;//getMappedCoordinates();
+        let mapped = this.naryLink.mapped;
         if (!mapped) {
             this.naryLink.setLinkCoordinates();
-            mapped = this.naryLink.mapped;//this.naryLink.orbitNodeCount(this.naryLink.getMappedCoordinates());
+            mapped = this.naryLink.mapped;
         }
         const mc = mapped.length;
         let xSum = 0,
@@ -55,8 +39,6 @@ export class Complex extends Interactor {
         }
         let center = [xSum / mc, ySum / mc];
         if (originPoint) {
-            // if (participant.type === "complex"){
-            //     startPoint = participant.getPosition();
             let naryPath = this.naryLink.hull;
             let iPath = [];
             for (let p of naryPath) {

src/js/viz/interactor/polymer.js

@@ -4,8 +4,6 @@ import {easeCubicInOut} from "d3-ease";
 import {rotatePointAboutPoint} from "../../geom";
 import {svgns} from "../../svgns";
 import {Interactor} from "./interactor";
-// import {Annotation} from "./annotation";
-// import {SequenceDatum} from "../sequence-datum";
 
 export class Polymer extends Interactor {
     constructor() {

src/js/viz/link/nary-link.js

@@ -1,4 +1,3 @@
-// import * as d3 from "d3"; //used for d3.geom.hull
 import {polygonHull} from "d3-polygon";
 import {Link} from "./link";
 import {rotatePointAboutPoint} from "../../geom";
@@ -13,23 +12,6 @@ export class NaryLink extends Link {
         this.unaryLinks = new Map();
     }
 
-    /*
-    NaryLink.prototype.getTotalParticipantCount = function () {
-        let result = 0;
-        const c = this.participants.length;
-        for (let p = 0; p < c; p++) {
-            const participant = this.participants[p];
-            //console.log("! " + typeof participant);
-            if (participant.type !== "complex") {
-                result++;
-            } else {
-                result += participant.naryLink.getTotalParticipantCount();
-            }
-        }
-        return result;
-    };
-    */
-
     get path () {
         if (!this._path) {
             this._path = this._createElement("path");
@@ -65,7 +47,7 @@ export class NaryLink extends Link {
 
     show() {
         // this.path.setAttribute("stroke-width", this.app.z);
-        // this.setLinkCoordinates(); // todo - having this here slows down start up. instead see lines 41-44 complex.js
+        // this.setLinkCoordinates(); // having this here slows down start up. instead see getPosition in complex.js
         this.app.naryLinks.appendChild(this.path);
         this.app.naryLinks.appendChild(this.path2);
     }

src/js/viz/link/unary-link.js

@@ -1,5 +1,3 @@
-//todo - is this even working? you never see it
-
 import {HideableLink} from "./hideable-link";
 
 export class UnaryLink extends HideableLink {

src/js/viz/sequence-datum.js

@@ -22,7 +22,6 @@ export class SequenceDatum {
         }
 
         if (this.sequenceDatumString === "?-?") {
-            //this.begin = 1;
             this.end = 1; //todo - having it at begining is affecting shape of line, look at why
             this.uncertainEnd = participant.size ? participant.size : 1;
         } else if (this.sequenceDatumString === "n-n") {
@@ -63,14 +62,12 @@ export class SequenceDatum {
                 if (this.begin === "n") {
                     this.uncertainBegin = 1;
                     this.begin = tidyPosition(this.end);
-                    // this.uncertainEnd = this.end;
                     this.end = null;
                 }
 
                 if (this.end === "c") {
                     this.uncertainEnd = participant.size;
                     this.end = tidyPosition(this.begin);
-                    // this.uncertainBegin = this.begin;
                     this.begin = null;
                 }