Merge pull request #127 from colin-combe/master

added citation, incremented version number

Author: colin-combe

README.md

@@ -1,14 +1,14 @@
-xiNET interaction viewer
-========================
+ComplexViewer
+==============
 
-v1.0 of the interaction viewer is deployed in EBI's Complex Portal, e.g. http://www.ebi.ac.uk/intact/complex/details/EBI-706830
+[Colin W Combe, Marine (Dumousseau) Sivade, Henning Hermjakob, Joshua Heimbach, Birgit H M Meldal, Gos Micklem, Sandra Orchard, Juri Rappsilber; ComplexViewer: visualization of curated macromolecular complexes, _Bioinformatics_, Volume 33, Issue 22, 15 November 2017, Pages 3673–3675, https://doi.org/10.1093/bioinformatics/btx497](https://doi.org/10.1093/bioinformatics/btx497)
+
+v1 of the interaction viewer is deployed in EBI's Complex Portal, e.g. http://www.ebi.ac.uk/intact/complex/details/EBI-706830
 
 We are working towards a general purpose web component for visualising interactions between biomolecules.
 The aim is to represent the data present in the PSI-MI standards.
 
-Join us!
-
-##Input data
+## Input data
 
 The 'MI-JSON' data format consumed by the interaction-viewer is generated by the JAMI framework.
 See: https://github.com/MICommunity/psimi
@@ -17,8 +17,9 @@ JAMI is capable of converting between various MI data formats, it can convert th
 
 JAMI was originally developed by Marine Dumousseau, who also largely determined the structure of the MI-JSON format the viewer reads.
 
-##Build Process
+## Build Process
 
+(0. install nodejs, npm)
 1. Clone the repository.
 2. $ cd /interaction-viewer
 3. $ npm install

demo/css/demo.css

@@ -15,6 +15,11 @@
     width:100%;
 }
 
+.page-header h1{
+    color: white;
+    text-decoration: underline;
+}
+
 h1 {
     font-size:1.6em;
     display:inline;

index.html

@@ -27,8 +27,7 @@
 
             <div class="page-header">
                     <i class="fa fa-github" onclick="window.location = 'https://github.com/MICommunity/ComplexViewer';" title="Go to GitHub project" style="margin-right:5px;"></i>
-                    <h1>ComplexViewer</h1>
-                    <p>Colin Combe, Marine (Dumousseau) Sivade, Henning Hermjakob, Joshua Heimbach, Birgit Meldal, Gos Micklem, Sandra Orchard, Juri Rappsilber</p>
+                    <a target="_blank" href="https://doi.org/10.1093/bioinformatics/btx497"><h1>ComplexViewer: visualization of curated macromolecular complexes</h1></a>
             </div>
 
             <div id="centre">

package.json

@@ -1,6 +1,6 @@
 {
   "name": "complexviewer",
-  "version": "1.0.8",
+  "version": "1.0.9",
   "description": "A network visualisation that displays molecular interaction data, including detailed residue-level information such as binding sites. v1 is used in EBI's Complex Portal. The aim for v2 is a general purpose viewer for PSI-MI XML data",
   "author": {
     "name": "Colin Combe",