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Merge pull request #6 from MPUSP/dev
fix: added missing reference section
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README.md

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[![Deploy to GitHub Pages](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml/badge.svg)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml)
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[![GitHub last commit](https://img.shields.io/github/last-commit/MPUSP/mpusp-github-io)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml)
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A homepage for the bioionformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](mpusp.mpg.de)).
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A homepage for the bioinformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](www.mpusp.mpg.de)).
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This website is built using [Docusaurus](https://docusaurus.io/), a modern static website generator.
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All data to render the less-static parts of the website (repo and user stats) are retrieved from Github using API requests.
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The website is automatically updated and built once per week, and on pull requests to the `main` branch.
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```
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This command generates static content into the `build` directory and can be served using any static contents hosting service.
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### References
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This page is loosely inspired by the [`conda-forge` homepage](https://conda-forge.org/), which is also built with Docusaurus and [hosted on Github](https://github.com/conda-forge/conda-forge.github.io):
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> conda-forge community. (2015). The conda-forge Project: Community-based Software Distribution Built on the conda Package Format and Ecosystem [Computer software]. https://doi.org/10.5281/zenodo.4774216
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Some functionality and design choices were inspired by the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/), which is co-maintained by Michael Jahn ([jahn@mpusp.mpg.de](https://github.com/m-jahn))
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> Koester, J., & Jahn, M. (2025). Snakemake Workflow Catalog (Version 1.0.0) [Computer software]. https://github.com/snakemake/snakemake-workflow-catalog

docs/projects/intro.md

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## Core competences
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- Data acquisition: study and experimental design, analysis strategies, data transfer and stoprage
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- Data quality control (QC): We provide our institute and the public with a range of [data processing workflows](/workflows), all of them featuring rich quality control (QC) functions
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- Data quality control (QC): We provide our institute and the public with a range of [data processing workflows](/docs/workflows/workflow_overview), all of them featuring rich quality control (QC) functions
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- Data analysis and visualization: One of our most important tasks; We handle primarily short and long read sequencing data for all types of genomics and transcriptomics. Many of our workflows are specially suited for microbial data.
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- Data deposition and sharing: We strive to annotate and deposit all relevant biological data on free and publicly accessible platforms, such as ENA (European Nucleotide Archive) or NCBI's SRA service.
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- Reproducible workflows: We deposit all of our scientific tools and workflows on (https://github.com/MPUSP), with a growing number of repositories being public and freely available under the MIT license.

docs/projects/projects/SpyViewer.md

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sidebar_position: 1
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# SpyViewer
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# Project 1
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This is a place holder. More information coming soon!
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---
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sidebar_position: 1
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sidebar_position: 2
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# Small ORFs
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# Project 2
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This is a place holder. More information coming soon!

docusaurus.config.js

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},
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{ to: "/blog", label: "News", position: "left" },
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{
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href: "https://mpusp.mpg.de",
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href: "https://www.mpusp.mpg.de",
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label: "MPUSP",
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position: "right",
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},

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