MiRQuest uses third-party libraries which may be distributed under different licenses. We have attempted to list all of these third party libraries and their licenses below.
You must agree to the terms of these licenses, in addition to the MiRQuest source code license, in order to use this software.
MIT License (http://opensource.org/licenses/MIT)
- renv - https://cran.r-project.org/web/packages/renv/
- vroom - https://cran.r-project.org/web/packages/vroom/
- dplyr - https://cran.r-project.org/web/packages/dplyr/
- tidyverse - https://cran.r-project.org/web/packages/tidyverse/
- ggplot2 - https://cran.r-project.org/web/packages/ggplot2/
- ggraph - https://cran.r-project.org/web/packages/ggraph/
- bslib - https://cran.r-project.org/web/packages/bslib/
- here - https://cran.r-project.org/web/packages/here/
- visNetwork - https://cran.csail.mit.edu/web/packages/visNetwork/index.html
- DT - https://cran.rstudio.com/web/packages/DT/
- plotly - https://cran.r-project.org/web/packages/plotly/
- shinyjs - https://cran.r-project.org/web/packages/shinyjs/
GPL-2 License (http://opensource.org/licenses/GPL-2.0)
- shiny.exe - https://cran.r-project.org/web/packages/shiny.exe/index.html
- cowplot - https://cran.r-project.org/web/packages/cowplot/
- miRNAtap - https://www.bioconductor.org/packages/release/bioc/html/miRNAtap.html
- edgeR - https://bioconductor.org/packages/release/bioc/html/edgeR.html
- pheatmap - https://cran.r-project.org/web/packages/pheatmap/
- igraph - https://cran.r-project.org/web/packages/igraph/
GPL-3 License (http://opensource.org/licenses/GPL-3.0)
- shiny - https://cran.r-project.org/web/packages/shiny/
- EnhancedVolcano - https://bioconductor.org/packages/release/bioc/html/EnhancedVolcano.html
- paletteer - https://cran.r-project.org/web/packages/paletteer/
- ReactomePA - https://bioconductor.org/packages/release/bioc/html/ReactomePA.html
Artistic-2.0 License (http://opensource.org/licenses/Artistic-2.0)
- org.Hs.eg.db - https://bioconductor.org/packages/release/data/annotation/html/org.Hs.eg.db.html
- org.Mm.eg.db - https://bioconductor.org/packages/release/data/annotation/html/org.Mm.eg.db.html
- clusterProfiler - https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
CC BY 4.0 License (https://creativecommons.org/licenses/by/4.0/)
LGPL License (http://opensource.org/licenses/LGPL-2.1)
- topGO - https://bioconductor.org/packages/release/bioc/html/topGO.html
- DESeq2 - https://bioconductor.org/packages/release/bioc/html/DESeq2.html
Code from the following sources has been modified to work in miRQuest. [Format: Name (Project) - URL]
We have documented where the modified code appears in the server files.
GPL-2 License (http://opensource.org/licenses/GPL-2.0)
MIT License (http://opensource.org/licenses/MIT)
- nf-core/smrnaseq (https://github.com/nf-core/smrnaseq/tree/master)
NOTE: For the most up-to-date information on licenses, please refer to the respective package documentation on CRAN or Bioconductor.