Bump minor version

Author: rycwo

.github/workflows/python-package.yml

@@ -21,7 +21,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           python -m pip install -r requirements.txt
-          python -m pip install requests-toolbelt ruff mypy typing_extensions types-networkx types-requests pytest numpy
+          python -m pip install requests-toolbelt ruff mypy typing_extensions types-networkx types-requests pytest networkx
       - name: Lint with Ruff
         run: ruff check --output-format=github .
       - run: |

metafold/auth.py

@@ -1,4 +1,4 @@
-from auth0.authentication import GetToken
+from auth0.authentication import GetToken  # type: ignore
 from collections import namedtuple
 from datetime import datetime, timedelta, timezone
 from typing import Optional

metafold/projects.py

@@ -157,7 +157,7 @@ def update(
         url = f"/projects/{id}"
         payload = asdict(name=name, project=data, graph=graph)
         # Access is optional, but we also need to cast to str
-        if access:
+        if isinstance(access, Access):
             payload["access"] = access.value
         r: Response = self._client.patch(url, json=payload)
         return Project(**r.json())

metafold/utils.py

@@ -1,5 +1,5 @@
 from numpy.typing import ArrayLike
-from scipy.spatial.transform import Rotation as R
+from scipy.spatial.transform import Rotation as R  # type: ignore
 from typing import Optional
 import numpy as np
 
@@ -8,7 +8,7 @@ def xform(
     translation: Optional[ArrayLike] = None,
     rotation: Optional[ArrayLike] = None,
     scale: Optional[ArrayLike] = None,
-) -> np.array:
+) -> np.ndarray:
     """Compose transformation matrix.
 
        Args:

pyproject.toml

@@ -4,14 +4,16 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "metafold"
-version = "0.5.0"
+version = "0.6.0"
 authors = [
     {name = "Metafold 3D", email = "info@metafold3d.com"},
 ]
 dependencies = [
     "attrs~=23.2",
     "auth0-python~=4.7",
+    "numpy~=1.23",
     "requests~=2.31",
+    "scipy~=1.11",
 ]
 readme = "README.md"
 license = {file = "LICENSE"}
@@ -47,7 +49,6 @@ lint = [
     "types-requests~=2.31",
 ]
 test = [
-    "numpy~=1.26",
     "pytest~=7.3",
     "requests-toolbelt~=1.0",
 ]

requirements.txt

@@ -1,5 +1,5 @@
 attrs~=23.2
 auth0-python~=4.7
-numpy ~= 1.23
+numpy~=1.23
 requests~=2.31
-scipy ~= 1.11
+scipy~=1.11