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jcdolljcdoll
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started flooxs planning
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‎.gitignore‎

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# Mac crap
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.DS_Store
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# TCAD tools (require registration, cannot redistribute)
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lookupTableGeneration/FLOOXS_*/
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# TCAD simulation outputs (keep .gitkeep and templates)
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lookupTableGeneration/simulations/*.out
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lookupTableGeneration/simulations/*.log
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lookupTableGeneration/simulations/*.str
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# Binary/generated files
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*.png
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*.jpg

‎AGENTS.md‎

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│ ├── tests/ # Test suite (empty)
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│ ├── examples/ # Usage examples
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│ └── archive/ # Legacy/experimental scripts
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├── lookupTableGeneration/ # COMSOL simulation scripts
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│ ├── simulationControl.py # COMSOL automation
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│ ├── postProcessTables.m # Post-processing
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│ ├── simulation.template # COMSOL template
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├── lookupTableGeneration/ # FLOOXS TCAD simulation (Docker)
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│ ├── Dockerfile # FLOOXS build instructions
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│ ├── docker-compose.yml # Container service definition
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│ ├── simulations/ # Input/output directory
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│ ├── postProcessTables.m # Post-processing (legacy)
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│ └── lookupTable.mat # Generated data
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├── Docs/ # Website (jemdoc)
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│ ├── html/ # Generated HTML

‎lookupTableGeneration/.dockerignore‎

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# Simulation outputs
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simulationInputs/
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simulationOutputs/
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*.out
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# Data files
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*.mat
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# Documentation
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*.md
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# Legacy scripts
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*.py
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*.m
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simulation.template
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# OS files
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.DS_Store
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Thumbs.db
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# Git
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.git/
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.gitignore

‎lookupTableGeneration/Dockerfile‎

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FROM ubuntu:24.04
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RUN apt-get update && apt-get install -y --no-install-recommends \
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build-essential \
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cmake \
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tcl \
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tcl-dev \
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tk \
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tk-dev \
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libsuitesparse-dev \
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libplplot-dev \
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plplot-tcl \
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libopenblas-dev \
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&& rm -rf /var/lib/apt/lists/*
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# Copy FLOOXS source (user must provide this folder)
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COPY FLOOXS_2026/ /opt/flooxs/
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# Set environment
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ENV FLXSHOME=/opt/flooxs
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ENV PL_LIBRARY=/usr/share/plplot5.15.0/tcl/
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# Build FLOOXS
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WORKDIR /opt/flooxs/src
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RUN mkdir -p release && cd release && cmake .. && make -j$(nproc)
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# Create working directory for simulations
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WORKDIR /work
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# The built executable
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ENTRYPOINT ["/opt/flooxs/src/release/flooxs"]

‎lookupTableGeneration/README.md‎

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# Lookup Table Generation
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Generate dopant profile lookup tables for PiezoD using FLOOXS TCAD process simulation.
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## Prerequisites
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- Docker (with Compose)
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- FLOOXS source code (free for academic/research use, requires registration)
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Request access: http://www.flooxs.ece.ufl.edu/index.php/Download
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## Setup
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1. Download FLOOXS source code after registration
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2. Extract to `FLOOXS_2026/` in this folder (gitignored, not committed)
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3. Build the Docker image (one time):
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```bash
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docker compose build
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```
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## Usage
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Run a simulation:
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```bash
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docker compose run --rm flooxs input.tcl
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```
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Input/output files go in `simulations/` which is mounted into the container.
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Interactive shell (for debugging):
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```bash
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docker compose run --rm flooxs /bin/bash
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```
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## Workflow
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1. Generate inputs - Python script creates FLOOXS input files in `simulations/`
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2. Run simulations - `docker compose run` executes FLOOXS on each input
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3. Post-process - Python/MATLAB extracts profiles and builds lookup table
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## Parameter Space
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| Parameter | Values |
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|-----------|--------|
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| Dopants | Boron, Phosphorus, Arsenic |
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| Doses | 2e14, 2e15, 2e16 cm^-2 |
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| Energies | 20, 50, 80 keV |
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| Anneal times | 15, 30, 45, 60, 75, 90, 105, 120 min |
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| Anneal temps | 900, 1000, 1100 C |
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| Oxidation | With/without passivation oxide |
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Total: 3 x 3 x 3 x 8 x 3 x 2 = 1296 simulations
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## Files
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| File | Description |
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|------|-------------|
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| `docker-compose.yml` | Container service definition |
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| `Dockerfile` | FLOOXS build instructions |
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| `simulations/` | Input/output directory (mounted in container) |
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| `postProcessTables.m` | MATLAB post-processor (legacy) |
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| `simulation.template` | TSUPREM-4 template (legacy, needs conversion) |
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| `simulationControl.py` | Python 2 runner (legacy, needs rewrite) |

‎lookupTableGeneration/docker-compose.yml‎

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services:
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flooxs:
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build: .
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image: piezod/flooxs:2026
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volumes:
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- ./simulations:/work
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working_dir: /work

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