Merge branch 'develop' into GEOPY-2741

# Conflicts:
#	environments/py-3.12-linux-64-dev.conda.lock.yml
#	environments/py-3.12-win-64-dev.conda.lock.yml
#	environments/py-3.13-linux-64-dev.conda.lock.yml
#	environments/py-3.13-win-64-dev.conda.lock.yml
#	environments/py-3.14-linux-64-dev.conda.lock.yml
#	environments/py-3.14-win-64-dev.conda.lock.yml
#	py-3.12.conda-lock.yml
#	py-3.13.conda-lock.yml
#	py-3.14.conda-lock.yml

Author: domfournier

.github/workflows/pr_add_jira_summary.yml .github/workflows/pr_jira_actions.yml.github/workflows/pr_add_jira_summary.yml renamed to .github/workflows/pr_jira_actions.yml

@@ -1,18 +1,16 @@
-name: Add JIRA issue summary
+name: JIRA actions
 
 on:
   pull_request:
-    types: [opened]
-
-permissions: {}
+    types: [opened, synchronize, reopened, ready_for_review]
 
 jobs:
-  call-workflow-add-jira-issue-summary:
-    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-pr_add_jira_summary.yml@v2
+  call-workflow-pr_jira_actions:
+    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-jira-pr_actions.yml@v3
     permissions:
       contents: read
       pull-requests: write
     secrets:
-      JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }}
-      JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }}
       JIRA_API_TOKEN: ${{ secrets.JIRA_API_TOKEN }}
+      JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }}
+      JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }}

environments/py-3.12-linux-64-dev.conda.lock.yml

@@ -10,15 +10,15 @@ dependencies:
   - _python_abi3_support=1.0=hd8ed1ab_2
   - alabaster=0.7.16=pyhd8ed1ab_0
   - annotated-types=0.7.0=pyhd8ed1ab_1
-  - anyio=4.12.1=pyhcf101f3_0
+  - anyio=4.13.0=pyhcf101f3_0
   - argon2-cffi=25.1.0=pyhd8ed1ab_0
   - argon2-cffi-bindings=25.1.0=py312h4c3975b_2
   - arrow=1.4.0=pyhcf101f3_0
   - asciitree=0.3.3=py_2
   - astroid=4.0.4=py312h7900ff3_0
   - asttokens=3.0.1=pyhd8ed1ab_0
-  - async-lru=2.2.0=pyhcf101f3_0
-  - attrs=25.4.0=pyhcf101f3_1
+  - async-lru=2.3.0=pyhcf101f3_0
+  - attrs=26.1.0=pyhcf101f3_0
   - babel=2.18.0=pyhcf101f3_1
   - backports.zstd=1.3.0=py312h90b7ffd_0
   - beautifulsoup4=4.14.3=pyha770c72_0
@@ -41,7 +41,7 @@ dependencies:
   - colorama=0.4.6=pyhd8ed1ab_1
   - comm=0.2.3=pyhe01879c_0
   - contourpy=1.3.3=py312h0a2e395_4
-  - coverage=7.13.4=py312h8a5da7c_0
+  - coverage=7.13.5=py312h8a5da7c_0
   - cpython=3.12.13=py312hd8ed1ab_0
   - cycler=0.12.1=pyhcf101f3_2
   - cytoolz=1.1.0=py312h4c3975b_2
@@ -60,21 +60,21 @@ dependencies:
   - fasteners=0.19=pyhd8ed1ab_1
   - fonttools=4.62.0=py312h8a5da7c_0
   - fqdn=1.5.1=pyhd8ed1ab_1
-  - freetype=2.14.2=ha770c72_0
+  - freetype=2.14.3=ha770c72_0
   - fsspec=2026.2.0=pyhd8ed1ab_0
   - geoana=0.8.1=np2py312h2a48985_0
   - h11=0.16.0=pyhcf101f3_1
   - h2=4.3.0=pyhcf101f3_0
-  - h5py=3.15.1=nompi_py312ha4f8f14_101
-  - hdf5=1.14.6=nompi_h19486de_106
+  - h5py=3.16.0=nompi_py312ha4f8f14_100
+  - hdf5=1.14.6=nompi_h19486de_108
   - hpack=4.1.0=pyhd8ed1ab_0
   - httpcore=1.0.9=pyh29332c3_0
   - httpx=0.28.1=pyhd8ed1ab_0
   - hyperframe=6.1.0=pyhd8ed1ab_0
   - icu=75.1=he02047a_0
   - idna=3.11=pyhd8ed1ab_0
-  - imagesize=1.4.1=pyhd8ed1ab_1
-  - importlib-metadata=8.7.0=pyhe01879c_1
+  - imagesize=2.0.0=pyhd8ed1ab_0
+  - importlib-metadata=8.8.0=pyhcf101f3_0
   - importlib_resources=6.5.2=pyhd8ed1ab_0
   - iniconfig=2.3.0=pyhd8ed1ab_0
   - ipykernel=7.2.0=pyha191276_1
@@ -88,7 +88,7 @@ dependencies:
   - jinja2=3.1.6=pyhcf101f3_1
   - joblib=1.5.3=pyhd8ed1ab_0
   - json5=0.13.0=pyhd8ed1ab_0
-  - jsonpointer=3.0.0=pyhcf101f3_3
+  - jsonpointer=3.1.1=pyhcf101f3_0
   - jsonschema=4.26.0=pyhcf101f3_0
   - jsonschema-specifications=2025.9.1=pyhcf101f3_0
   - jsonschema-with-format-nongpl=4.26.0=hcf101f3_0
@@ -109,35 +109,35 @@ dependencies:
   - krb5=1.22.2=ha1258a1_0
   - lark=1.3.1=pyhd8ed1ab_0
   - lcms2=2.18=h0c24ade_0
-  - ld_impl_linux-64=2.45.1=default_hbd61a6d_101
+  - ld_impl_linux-64=2.45.1=default_hbd61a6d_102
   - lerc=4.1.0=hdb68285_0
   - libaec=1.1.5=h088129d_0
-  - libblas=3.11.0=5_h5875eb1_mkl
+  - libblas=3.11.0=6_h5875eb1_mkl
   - libbrotlicommon=1.2.0=hb03c661_1
   - libbrotlidec=1.2.0=hb03c661_1
   - libbrotlienc=1.2.0=hb03c661_1
-  - libcblas=3.11.0=5_hfef963f_mkl
+  - libcblas=3.11.0=6_hfef963f_mkl
   - libcurl=8.19.0=hcf29cc6_0
   - libdeflate=1.25=h17f619e_0
   - libdlf=0.3.0=pyhd8ed1ab_1
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libev=4.33=hd590300_2
   - libexpat=2.7.4=hecca717_0
   - libffi=3.5.2=h3435931_0
-  - libfreetype=2.14.2=ha770c72_0
-  - libfreetype6=2.14.2=h73754d4_0
+  - libfreetype=2.14.3=ha770c72_0
+  - libfreetype6=2.14.3=h73754d4_0
   - libgcc=15.2.0=he0feb66_18
   - libgcc-ng=15.2.0=h69a702a_18
   - libgfortran=15.2.0=h69a702a_18
   - libgfortran5=15.2.0=h68bc16d_18
   - libhwloc=2.12.2=default_hafda6a7_1000
   - libiconv=1.18=h3b78370_2
   - libjpeg-turbo=3.1.2=hb03c661_0
-  - liblapack=3.11.0=5_h5e43f62_mkl
+  - liblapack=3.11.0=6_h5e43f62_mkl
   - liblzma=5.8.2=hb03c661_0
-  - libnghttp2=1.67.0=had1ee68_0
+  - libnghttp2=1.68.1=h877daf1_0
   - libnsl=2.0.1=hb9d3cd8_1
-  - libpng=1.6.55=h421ea60_0
+  - libpng=1.6.56=h421ea60_0
   - libscotch=7.0.11=int64_hfcc3fd4_2
   - libsodium=1.0.21=h280c20c_3
   - libspatialindex=2.1.0=he57a185_0
@@ -153,8 +153,8 @@ dependencies:
   - libxcrypt=4.4.36=hd590300_1
   - libxml2=2.15.1=h26afc86_0
   - libxml2-16=2.15.1=ha9997c6_0
-  - libzlib=1.3.1=hb9d3cd8_2
-  - llvm-openmp=22.1.0=h4922eb0_0
+  - libzlib=1.3.2=h25fd6f3_2
+  - llvm-openmp=22.1.1=h4922eb0_0
   - locket=1.0.0=pyhd8ed1ab_0
   - markdown-it-py=4.0.0=pyhd8ed1ab_0
   - markupsafe=3.0.3=py312h8a5da7c_1
@@ -165,7 +165,7 @@ dependencies:
   - mdurl=0.1.2=pyhd8ed1ab_1
   - metis=5.1.0=hd0bcaf9_1007
   - mistune=3.2.0=pyhcf101f3_0
-  - mkl=2025.3.0=h0e700b2_463
+  - mkl=2025.3.1=h0e700b2_10
   - msgpack-python=1.1.2=py312hd9148b4_1
   - mumps-include=5.8.2=h5a610fb_2
   - mumps-seq=5.8.2=hc1b3267_2
@@ -181,14 +181,14 @@ dependencies:
   - notebook=7.5.5=pyhcf101f3_0
   - notebook-shim=0.2.4=pyhd8ed1ab_1
   - numcodecs=0.15.1=py312hf79963d_1
-  - numpy=2.4.2=py312h33ff503_1
+  - numpy=2.4.3=py312h33ff503_0
   - openjpeg=2.5.4=h55fea9a_0
   - openpyxl=3.1.5=py312h7f6eeab_3
   - openssl=3.6.1=h35e630c_1
   - overrides=7.7.0=pyhd8ed1ab_1
   - packaging=26.0=pyhcf101f3_0
   - pandas=3.0.1=py312h8ecdadd_0
-  - pandoc=3.9=ha770c72_0
+  - pandoc=3.9.0.2=ha770c72_0
   - pandocfilters=1.5.0=pyhd8ed1ab_0
   - parso=0.8.6=pyhcf101f3_0
   - partd=1.4.2=pyhd8ed1ab_0
@@ -213,7 +213,7 @@ dependencies:
   - pyparsing=3.3.2=pyhcf101f3_0
   - pysocks=1.7.1=pyha55dd90_7
   - pytest=9.0.2=pyhcf101f3_0
-  - pytest-cov=7.0.0=pyhcf101f3_1
+  - pytest-cov=7.1.0=pyhcf101f3_0
   - python=3.12.13=hd63d673_0_cpython
   - python-dateutil=2.9.0.post0=pyhe01879c_2
   - python-fastjsonschema=2.21.2=pyhe01879c_0
@@ -228,7 +228,7 @@ dependencies:
   - readline=8.3=h853b02a_0
   - readthedocs-sphinx-ext=2.2.5=pyhd8ed1ab_1
   - referencing=0.37.0=pyhcf101f3_0
-  - requests=2.32.5=pyhcf101f3_1
+  - requests=2.33.0=pyhcf101f3_0
   - rfc3339-validator=0.1.4=pyhd8ed1ab_1
   - rfc3986-validator=0.1.1=pyh9f0ad1d_0
   - rfc3987-syntax=1.1.0=pyhe01879c_1
@@ -257,10 +257,10 @@ dependencies:
   - threadpoolctl=3.6.0=pyhecae5ae_0
   - tinycss2=1.4.0=pyhd8ed1ab_0
   - tk=8.6.13=noxft_h366c992_103
-  - tomli=2.4.0=pyhcf101f3_0
+  - tomli=2.4.1=pyhcf101f3_0
   - tomlkit=0.14.0=pyha770c72_0
   - toolz=1.1.0=pyhd8ed1ab_1
-  - tornado=6.5.3=py312h4c3975b_0
+  - tornado=6.5.5=py312h4c3975b_0
   - tqdm=4.67.3=pyh8f84b5b_0
   - traitlets=5.14.3=pyhd8ed1ab_1
   - trimesh=4.1.8=pyhd8ed1ab_0
@@ -287,14 +287,14 @@ dependencies:
   - zeromq=4.3.5=h41580af_10
   - zict=3.0.0=pyhd8ed1ab_1
   - zipp=3.23.0=pyhcf101f3_1
-  - zlib=1.3.1=hb9d3cd8_2
+  - zlib=1.3.2=h25fd6f3_2
   - zlib-ng=2.3.3=hceb46e0_1
   - zstd=1.5.7=hb78ec9c_6
   - pip:
-    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@fb86adf72fb82ea23c8904a39585982ca8793c52
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@7e3b1de8e0eab8b7b7199487bab23d8bbf18ce26
-    - grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@ad1de3ed43ac802bf71eef3fc5ba75d5be525efe
-    - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@8a9cf452335379363e15ac7a3cd9bf689d8e2841
+    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@eb0474175000819e93d8dc701ed0fd6101c44451
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a4d826715e5f529242e2c7eac2805e05e1ec3027
+    - grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@0e66e6b7a44ede34563da6a77ccd87a4cc7b5185
+    - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@f7dd0d37aac285dd9ece26396ee39ae72bd6d18d
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.12-linux-64.conda.lock.yml

@@ -31,51 +31,51 @@ dependencies:
   - et_xmlfile=2.0.0=pyhd8ed1ab_1
   - fasteners=0.19=pyhd8ed1ab_1
   - fonttools=4.62.0=py312h8a5da7c_0
-  - freetype=2.14.2=ha770c72_0
+  - freetype=2.14.3=ha770c72_0
   - fsspec=2026.2.0=pyhd8ed1ab_0
   - geoana=0.8.1=np2py312h2a48985_0
   - h2=4.3.0=pyhcf101f3_0
-  - h5py=3.15.1=nompi_py312ha4f8f14_101
-  - hdf5=1.14.6=nompi_h19486de_106
+  - h5py=3.16.0=nompi_py312ha4f8f14_100
+  - hdf5=1.14.6=nompi_h19486de_108
   - hpack=4.1.0=pyhd8ed1ab_0
   - hyperframe=6.1.0=pyhd8ed1ab_0
   - icu=75.1=he02047a_0
-  - importlib-metadata=8.7.0=pyhe01879c_1
+  - importlib-metadata=8.8.0=pyhcf101f3_0
   - jinja2=3.1.6=pyhcf101f3_1
   - joblib=1.5.3=pyhd8ed1ab_0
   - keyutils=1.6.3=hb9d3cd8_0
   - kiwisolver=1.5.0=py312h0a2e395_0
   - krb5=1.22.2=ha1258a1_0
   - lcms2=2.18=h0c24ade_0
-  - ld_impl_linux-64=2.45.1=default_hbd61a6d_101
+  - ld_impl_linux-64=2.45.1=default_hbd61a6d_102
   - lerc=4.1.0=hdb68285_0
   - libaec=1.1.5=h088129d_0
-  - libblas=3.11.0=5_h5875eb1_mkl
+  - libblas=3.11.0=6_h5875eb1_mkl
   - libbrotlicommon=1.2.0=hb03c661_1
   - libbrotlidec=1.2.0=hb03c661_1
   - libbrotlienc=1.2.0=hb03c661_1
-  - libcblas=3.11.0=5_hfef963f_mkl
+  - libcblas=3.11.0=6_hfef963f_mkl
   - libcurl=8.19.0=hcf29cc6_0
   - libdeflate=1.25=h17f619e_0
   - libdlf=0.3.0=pyhd8ed1ab_1
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libev=4.33=hd590300_2
   - libexpat=2.7.4=hecca717_0
   - libffi=3.5.2=h3435931_0
-  - libfreetype=2.14.2=ha770c72_0
-  - libfreetype6=2.14.2=h73754d4_0
+  - libfreetype=2.14.3=ha770c72_0
+  - libfreetype6=2.14.3=h73754d4_0
   - libgcc=15.2.0=he0feb66_18
   - libgcc-ng=15.2.0=h69a702a_18
   - libgfortran=15.2.0=h69a702a_18
   - libgfortran5=15.2.0=h68bc16d_18
   - libhwloc=2.12.2=default_hafda6a7_1000
   - libiconv=1.18=h3b78370_2
   - libjpeg-turbo=3.1.2=hb03c661_0
-  - liblapack=3.11.0=5_h5e43f62_mkl
+  - liblapack=3.11.0=6_h5e43f62_mkl
   - liblzma=5.8.2=hb03c661_0
-  - libnghttp2=1.67.0=had1ee68_0
+  - libnghttp2=1.68.1=h877daf1_0
   - libnsl=2.0.1=hb9d3cd8_1
-  - libpng=1.6.55=h421ea60_0
+  - libpng=1.6.56=h421ea60_0
   - libscotch=7.0.11=int64_hfcc3fd4_2
   - libspatialindex=2.1.0=he57a185_0
   - libsqlite=3.52.0=h0c1763c_0
@@ -89,20 +89,20 @@ dependencies:
   - libxcrypt=4.4.36=hd590300_1
   - libxml2=2.15.1=h26afc86_0
   - libxml2-16=2.15.1=ha9997c6_0
-  - libzlib=1.3.1=hb9d3cd8_2
-  - llvm-openmp=22.1.0=h4922eb0_0
+  - libzlib=1.3.2=h25fd6f3_2
+  - llvm-openmp=22.1.1=h4922eb0_0
   - locket=1.0.0=pyhd8ed1ab_0
   - markupsafe=3.0.3=py312h8a5da7c_1
   - matplotlib-base=3.10.8=py312he3d6523_0
   - metis=5.1.0=hd0bcaf9_1007
-  - mkl=2025.3.0=h0e700b2_463
+  - mkl=2025.3.1=h0e700b2_10
   - msgpack-python=1.1.2=py312hd9148b4_1
   - mumps-include=5.8.2=h5a610fb_2
   - mumps-seq=5.8.2=hc1b3267_2
   - munkres=1.1.4=pyhd8ed1ab_1
   - ncurses=6.5=h2d0b736_3
   - numcodecs=0.15.1=py312hf79963d_1
-  - numpy=2.4.2=py312h33ff503_1
+  - numpy=2.4.3=py312h33ff503_0
   - openjpeg=2.5.4=h55fea9a_0
   - openpyxl=3.1.5=py312h7f6eeab_3
   - openssl=3.6.1=h35e630c_1
@@ -138,7 +138,7 @@ dependencies:
   - threadpoolctl=3.6.0=pyhecae5ae_0
   - tk=8.6.13=noxft_h366c992_103
   - toolz=1.1.0=pyhd8ed1ab_1
-  - tornado=6.5.3=py312h4c3975b_0
+  - tornado=6.5.5=py312h4c3975b_0
   - tqdm=4.67.3=pyh8f84b5b_0
   - trimesh=4.1.8=pyhd8ed1ab_0
   - typing-extensions=4.15.0=h396c80c_0
@@ -159,10 +159,10 @@ dependencies:
   - zlib-ng=2.3.3=hceb46e0_1
   - zstd=1.5.7=hb78ec9c_6
   - pip:
-    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@fb86adf72fb82ea23c8904a39585982ca8793c52
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@7e3b1de8e0eab8b7b7199487bab23d8bbf18ce26
-    - grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@ad1de3ed43ac802bf71eef3fc5ba75d5be525efe
-    - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@8a9cf452335379363e15ac7a3cd9bf689d8e2841
+    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@eb0474175000819e93d8dc701ed0fd6101c44451
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a4d826715e5f529242e2c7eac2805e05e1ec3027
+    - grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@0e66e6b7a44ede34563da6a77ccd87a4cc7b5185
+    - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@f7dd0d37aac285dd9ece26396ee39ae72bd6d18d
 
 variables:
   KMP_WARNINGS: 0