Adds citation file to repo

Author: erikhuck

CITATION.cff

@@ -0,0 +1,23 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite this article in the reference section."
+authors:
+- family-names: "Huckvale"
+  given-names: "Erik"
+- family-names: "Moseley"
+  given-names: "Hunter"
+title: "kegg-pull"
+version: 2.1.0
+date-released: 2023-02-15
+url: "https://github.com/MoseleyBioinformaticsLab/kegg_pull"
+references:
+  - authors:
+    - family-names: "Huckvale"
+      given-names: "Erik"
+    - family-names: "Moseley"
+      given-names: "Hunter"
+    type: article
+    doi: "https://doi.org/10.1101/2022.11.03.515120"
+    journal: "BMC Bioinformatics"
+    title: "kegg_pull: a Software Package for the RESTful Access and Pulling from The Kyoto Encyclopedia of Gene and Genomes"
+    volume: 24
+    year: 2023

dev/test_data/all-brite-entry-ids.txt

@@ -1,139 +1,140 @@
-br:br08901
-br:br08902
-br:br08904
-br:ko00001
-br:ko00002
-br:ko00003
-br:br08907
-br:ko01000
-br:ko01001
-br:ko01009
-br:ko01002
-br:ko01003
-br:ko01005
-br:ko01011
-br:ko01004
-br:ko01008
-br:ko01006
-br:ko01007
-br:ko00199
-br:ko00194
-br:ko03000
-br:ko03021
-br:ko03019
-br:ko03041
-br:ko03011
-br:ko03009
-br:ko03016
-br:ko03012
-br:ko03110
-br:ko04131
-br:ko04121
-br:ko03051
-br:ko03032
-br:ko03036
-br:ko03400
-br:ko03029
-br:ko02000
-br:ko02044
-br:ko02042
-br:ko02022
-br:ko02035
-br:ko03037
-br:ko04812
-br:ko04147
-br:ko02048
-br:ko04030
-br:ko04050
-br:ko04054
-br:ko03310
-br:ko04040
-br:ko04031
-br:ko04052
-br:ko04515
-br:ko04090
-br:ko01504
-br:ko00535
-br:ko00536
-br:ko00537
-br:ko04091
-br:ko04990
-br:ko03200
-br:ko03210
-br:ko03100
-br:br08001
-br:br08002
-br:br08003
-br:br08005
-br:br08006
-br:br08007
-br:br08009
-br:br08021
-br:br08201
-br:br08202
-br:br08204
-br:br08203
-br:br08303
-br:br08302
-br:br08301
-br:br08313
-br:br08312
-br:br08304
-br:br08305
-br:br08331
-br:br08330
-br:br08332
-br:br08310
-br:br08307
-br:br08327
-br:br08311
-br:br08402
-br:br08401
-br:br08403
-br:br08411
-br:br08410
-br:br08420
-br:br08601
-br:br08610
-br:br08611
-br:br08612
-br:br08613
-br:br08614
-br:br08615
-br:br08620
-br:br08621
-br:br08605
-br:br03220
-br:br03222
-br:br01610
-br:br01611
-br:br01612
-br:br01613
-br:br01601
-br:br01602
-br:br01600
-br:br01620
-br:br01553
-br:br01554
-br:br01556
-br:br01555
-br:br01557
-br:br01800
-br:br01810
-br:br08011
-br:br08020
-br:br08012
-br:br08120
-br:br08319
-br:br08329
-br:br08318
-br:br08328
-br:br08309
-br:br08341
-br:br08324
-br:br08317
-br:br08315
-br:br08314
-br:br08442
-br:br08441
-br:br08431
+br08901
+br08902
+br08904
+br08906
+ko00001
+ko00002
+ko00003
+br08907
+ko01000
+ko01001
+ko01009
+ko01002
+ko01003
+ko01005
+ko01011
+ko01004
+ko01008
+ko01006
+ko01007
+ko00199
+ko00194
+ko03000
+ko03021
+ko03019
+ko03041
+ko03011
+ko03009
+ko03016
+ko03012
+ko03110
+ko04131
+ko04121
+ko03051
+ko03032
+ko03036
+ko03400
+ko03029
+ko02000
+ko02044
+ko02042
+ko02022
+ko02035
+ko03037
+ko04812
+ko04147
+ko02048
+ko04030
+ko04050
+ko04054
+ko03310
+ko04040
+ko04031
+ko04052
+ko04515
+ko04090
+ko01504
+ko00535
+ko00536
+ko00537
+ko04091
+ko04990
+ko03200
+ko03210
+ko03100
+br08001
+br08002
+br08003
+br08005
+br08006
+br08007
+br08009
+br08021
+br08201
+br08202
+br08204
+br08203
+br08303
+br08302
+br08301
+br08313
+br08312
+br08304
+br08305
+br08331
+br08330
+br08332
+br08310
+br08307
+br08327
+br08311
+br08402
+br08401
+br08403
+br08411
+br08410
+br08420
+br08601
+br08610
+br08611
+br08612
+br08613
+br08614
+br08615
+br08620
+br08621
+br08605
+br03220
+br03222
+br01610
+br01611
+br01612
+br01613
+br01601
+br01602
+br01600
+br01620
+br01553
+br01554
+br01556
+br01555
+br01557
+br01800
+br01810
+br08011
+br08020
+br08012
+br08120
+br08319
+br08329
+br08318
+br08328
+br08309
+br08341
+br08324
+br08317
+br08315
+br08314
+br08442
+br08441
+br08431

dev/test_data/brite-entries/br_br08902.txt

@@ -6,6 +6,7 @@ C    br08901  KEGG pathway maps
 B  Brite files
 C    br08902  BRITE hierarchy files
 C    br08904  BRITE table files
+C    br08906  BRITE binary relation files
 AGenes and Proteins
 B  Orthologs, modules and networks
 C    ko00001  KEGG Orthology (KO)
@@ -131,5 +132,5 @@ B  Organism information
 C    br08605  Plant pathogens
 !
 #
-#Last updated: July 15, 2022
+#Last updated: February 24, 2023
 #» Japanese version