rule changed to rules ... typo

Author: kopardev

workflow/rules/rsem.smk

@@ -38,7 +38,7 @@ rule get_strand_info:
     input:
         starbam=rules.star.output.starbam, # used only for strandinfo
     output:
-        strandinfo=join(WORKDIR,"rsem","{sample}","{sample}.strandinfo")
+        strandinfo=join(WORKDIR,"rsem","{sample}","{sample}.strandinfo"),
     envmodules: TOOLS['rseqc']['version'],
     params:
         sample="{sample}",
@@ -53,7 +53,7 @@ infer_experiment.py -r {input.bed12} -i {input.starbam} -s 1000000 > {output.str
 
 rule get_rsem_counts:
     input:
-        strandinfo=rule.get_strand_info.output.strandinfo,
+        strandinfo=rules.get_strand_info.output.strandinfo,
         tbam=rules.star.output.tbam,
         bed12=rules.create_bed12.output.bed12,
         ump=rules.create_rsem_index.output.ump      
@@ -84,7 +84,7 @@ mv {params.sample}.isoforms.results {output.tcounts}
 
 rule get_rsem_counts_mutated:
     input:
-        strandinfo=rule.get_strand_info.output.strandinfo,
+        strandinfo=rules.get_strand_info.output.strandinfo,
         mutatedtbam=rules.split_tbam_by_mutation.output.mutatedtbam,
         bed12=rules.create_bed12.output.bed12,
         ump=rules.create_rsem_index.output.ump      
@@ -115,7 +115,7 @@ mv {params.sample}_mutated.isoforms.results {output.mutatedtcounts}
 
 rule get_rsem_counts_unmutated:
     input:
-        strandinfo=rule.get_strand_info.output.strandinfo,
+        strandinfo=rules.get_strand_info.output.strandinfo,
         unmutatedtbam=rules.split_tbam_by_mutation.output.unmutatedtbam,
         bed12=rules.create_bed12.output.bed12,
         ump=rules.create_rsem_index.output.ump