Snakefile updates

Author: kopardev

workflow/Snakefile

@@ -61,7 +61,7 @@ rule all:
         # gather stats
         expand(join(WORKDIR,"qc","nfragments","{sample}.json"),sample=SAMPLES),
         # nfragments qc table
-        # join(WORKDIR,"qc","nfragments","nfragments.tsv"),
+        join(WORKDIR,"qc","nfragments","nfragments.tsv"),
         # # htseq counts per sample
         # expand(join(WORKDIR,"htseq","{sample}.mutated.exon.counts"), sample=SAMPLES),
         # expand(join(WORKDIR,"htseq","{sample}.unmutated.exon.counts"), sample=SAMPLES),
@@ -74,4 +74,4 @@ rule all:
         expand(join(WORKDIR,"rsem","{sample}","{sample}.RSEM.genes.results"),sample=SAMPLES),
         expand(join(WORKDIR,"rsem","{sample}","{sample}_mutated.RSEM.genes.results"), sample=SAMPLES),
         expand(join(WORKDIR,"rsem","{sample}","{sample}_unmutated.RSEM.genes.results"), sample=SAMPLES)
-        
+