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bed12 input is required by get_strand_info
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workflow/rules/rsem.smk

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@@ -37,6 +37,7 @@ rm -f ${{bn}}.tmp
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rule get_strand_info:
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input:
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starbam=rules.star.output.starbam, # used only for strandinfo
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bed12=rules.create_bed12.output.bed12,
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output:
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strandinfo=join(WORKDIR,"rsem","{sample}","{sample}.strandinfo"),
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envmodules: TOOLS['rseqc']['version'],

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