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## Generic patterns ##
### Files, specifically designated as private by convention ###
private*
[Ii]gnore
### Build output ###
build
report
### Application logs ###
logs
*.log
### Temporary Subversion files ###
*.mine
### Backup files ###
*.bak
~$*
### Windows system files ###
# Windows thumbnail cache files
Thumbs.db
ehthumbs.db
ehthumbs_vista.db
# Folder config file
Desktop.ini
# Recycle Bin used on file shares
$RECYCLE.BIN
# Windows Installer files
*.cab
*.msi
*.msm
*.msp
# Windows shortcuts
*.lnk
### macOS system files ###
*.DS_Store
.AppleDouble
.LSOverride
# Icon must end with two \r
Icon
# Companion files
._*
# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk
## Other VCS ##
# SVN
.svn
## JetBrains IDEs: IntelliJ IDEA, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and Webstorm ##
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
# User-specific stuff:
.idea/**/workspace.xml
.idea/**/tasks.xml
.idea/dictionaries
# Sensitive or high-churn files:
.idea/**/dataSources/
.idea/**/dataSources.ids
# dataSources.local.xml does not store passwords, but it does store Known Schemas
#.idea/**/dataSources.local.xml
.idea/**/sqlDataSources.xml
.idea/**/dynamic.xml
.idea/**/uiDesigner.xml
# Gradle:
.idea/**/gradle.xml
.idea/**/libraries
# CMake
cmake-build-debug/
# Mongo Explorer plugin:
.idea/**/mongoSettings.xml
# File-based project format:
*.iws
### Plugin-specific files ###
# IntelliJ IDEA
/out/
# mpeltonen/sbt-idea plugin
.idea_modules/
# JIRA plugin
atlassian-ide-plugin.xml
# Cursive Clojure plugin
.idea/replstate.xml
# Crashlytics plugin (for Android Studio and IntelliJ)
com_crashlytics_export_strings.xml
crashlytics.properties
crashlytics-build.properties
fabric.properties
P2_studies/theta_plus/.ipynb_checkpoints/compute_mcl_jsd-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/Cluster_JSD_Computation-checkpoint.ipynb
P2_studies/theta_plus/.ipynb_checkpoints/MCL Text Analysis-checkpoint.ipynb
P2_studies/theta_plus/.ipynb_checkpoints/JSD_coherence-checkpoint.ipynb
P2_studies/theta_plus/.ipynb_checkpoints/conductance-checkpoint.ipynb
P2_studies/theta_plus/.ipynb_checkpoints/jsd_random-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/conductance-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/jsd_compute-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/jsd_modules-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/jsd_coherence-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/jsd_conductance-checkpoint.py
*.pyc
P2_studies/theta_plus/.ipynb_checkpoints/compute_article_score-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/compute_conductance-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/final_output-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/text_preprocess-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/ad_hoc-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/merge_all_output-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/imm89-checkpoint.sql
P2_studies/comp_case_study/.ipynb_checkpoints/graclus_input_data_tp-checkpoint.sql
P2_studies/comp_case_study/.ipynb_checkpoints/graclus_input_data-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/get_graclus_edgelist-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_graclus_cluster_scp_list-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/shuffled_sample_conductance-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/match_mcl_to_graclus-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/thetaplus_visualize_clusters-checkpoint.ipynb
P2_studies/theta_plus/.ipynb_checkpoints/match_superset_years-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_cited_articles_authors-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/match_rated_mcl_to_graclus-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/match_mcl_to_enriched-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_coherence_conductance_rated_set-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_graph_citations-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_rated_mcl_graclus_all_data-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1985-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1985_1995-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/get_mcl_graclus_all_data-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1986-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1987-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1988-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1989-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1990-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1991-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1992-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1993-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1994-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/add_author_count_imm1995-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/untitled-checkpoint.txt
P2_studies/theta_plus/.ipynb_checkpoints/get_in_cluster_author_citations-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_rated_author_95_citing-checkpoint.py
P2_studies/sb_plus_triplets/.ipynb_checkpoints/sb_plus_triplets DDL-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/cluster_comparison-checkpoint.R
P2_studies/sb_plus_triplets/.ipynb_checkpoints/compute_article_score-checkpoint.py
P2_studies/sb_plus_triplets/.ipynb_checkpoints/compute_conductance-checkpoint.py
P2_studies/sb_plus_triplets/.ipynb_checkpoints/get_graclus_cluster_scp_list-checkpoint.py
P2_studies/sb_plus_triplets/.ipynb_checkpoints/match_mcl_to_graclus-checkpoint.py
P2_studies/sb_plus_triplets/.ipynb_checkpoints/merge_all_output-checkpoint.py
P2_studies/sb_plus_triplets/.ipynb_checkpoints/sb_plus_triplets_DDL-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/get_all_graph_degrees-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_superset_30_350_external_cluster_degrees-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_superset_30_350_internal_cluster_degrees-checkpoint.py
P2_studies/theta_plus/.ipynb_checkpoints/get_all_external_cluster_degrees-checkpoint.py
P2_studies/theta_plus/*.ipynb_checkpoints/*
P2_studies/theta_plus/.ipynb_checkpoints/ecology_DDL-checkpoint.sql
P2_studies/theta_plus/.ipynb_checkpoints/generic_mcl_pipeline-checkpoint.sh
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/ecology_DDL-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1985-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1986-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1987-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1988-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1989-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1990-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1991-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1992-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1993-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1994-checkpoint.sql
P2_studies/theta_plus/Postgres/DDL/.ipynb_checkpoints/eco1995-checkpoint.sql
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/compute_article_score-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/compute_conductance-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/merge_all_output-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/compute_article_score-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/compute_conductance-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/merge_all_output-checkpoint.py
.ipynb_checkpoints
P2_studies/theta_plus/Analysis/Graph/.ipynb_checkpoints/get_all_external_cluster_degrees-checkpoint.py
P2_studies/theta_plus/Analysis/Graph/.ipynb_checkpoints/get_all_external_cluster_degrees-checkpoint.py
P2_studies/theta_plus/Analysis/Graph/.ipynb_checkpoints/get_all_external_cluster_degrees-checkpoint.py
P2_studies/theta_plus/Analysis/Graph/.ipynb_checkpoints/get_all_external_cluster_degrees-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/jsd_modules-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/jsd_modules-checkpoint.py
.ipynb_checkpoints
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/jsd_modules-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/get_rated_mcl_graclus_all_data-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/match_mcl_to_enriched-checkpoint.py
P2_studies/theta_plus/Analysis/Evaluation/.ipynb_checkpoints/jsd_modules-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/get_rated_mcl_graclus_all_data-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/match_mcl_to_enriched-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/match_mcl_to_graclus-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/match_rated_mcl_to_graclus-checkpoint.py
P2_studies/theta_plus/Analysis/Mapping/.ipynb_checkpoints/match_superset_years-checkpoint.py