From 0064c9f190fdd8fc1d357a7b11c103be8def2d62 Mon Sep 17 00:00:00 2001 From: Ted-Bender <122031815+Ted-Bender@users.noreply.github.com> Date: Fri, 23 May 2025 08:29:04 +0200 Subject: [PATCH 1/7] Update 10_analytical_chemistry.mdx --- docs/10_domains/10_analytical_chemistry.mdx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/10_domains/10_analytical_chemistry.mdx b/docs/10_domains/10_analytical_chemistry.mdx index 673fed99..4a325bae 100644 --- a/docs/10_domains/10_analytical_chemistry.mdx +++ b/docs/10_domains/10_analytical_chemistry.mdx @@ -28,7 +28,7 @@ Some open data formats are available for specific data types, such as mass spect For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. Many universities supply tools and templates for DMPs (see the [respective article](/docs/dmp) for more information). +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. General chemistry ELNs can typically be used for analytical chemistry data and may be well suited to your research topic. However, there are also specialised tools that are tailored to the needs of analytical chemists. These tools often include features for managing instrument data, processing raw data files and visualising results. They may also include tools for chemometric analysis. From 5635e26eb8da8bb4d71dc9497e2cd7b8dd7dbcb0 Mon Sep 17 00:00:00 2001 From: Ted-Bender <122031815+Ted-Bender@users.noreply.github.com> Date: Fri, 23 May 2025 08:29:23 +0200 Subject: [PATCH 2/7] Update 20_electrochemistry.mdx --- docs/10_domains/20_electrochemistry.mdx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/10_domains/20_electrochemistry.mdx b/docs/10_domains/20_electrochemistry.mdx index 67729432..a185a40a 100644 --- a/docs/10_domains/20_electrochemistry.mdx +++ b/docs/10_domains/20_electrochemistry.mdx @@ -32,7 +32,7 @@ Further data evaluation can yield any kind of time series data or imaging data. For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. Many universities supply tools and templates for DMPs (see the [respective article](/docs/dmp) for more information). +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. An [electronic lab notebook (ELN)](/docs/eln) helps in the day-to-day planning and structured documentation of experiments, while some also assist in data workflow management. From 039945b2268c1d5184893ac455aafc9e9bb002af Mon Sep 17 00:00:00 2001 From: Ted-Bender <122031815+Ted-Bender@users.noreply.github.com> Date: Fri, 23 May 2025 08:29:37 +0200 Subject: [PATCH 3/7] Update 30_pharmaceutical_chemistry.mdx --- docs/10_domains/30_pharmaceutical_chemistry.mdx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/10_domains/30_pharmaceutical_chemistry.mdx b/docs/10_domains/30_pharmaceutical_chemistry.mdx index c13fb922..c9afc122 100644 --- a/docs/10_domains/30_pharmaceutical_chemistry.mdx +++ b/docs/10_domains/30_pharmaceutical_chemistry.mdx @@ -22,7 +22,7 @@ The most common types of data in pharmaceutical/medicinal chemistry can be divid For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. Many universities supply tools and templates for DMPs (see the [respective article](/docs/dmp) for more information). +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. To meet the requirements for FAIR data management, electronic lab notebooks (ELNs) are particularly useful as they can take over many documentation tasks for researchers. The [ELN-Finder](https://eln-finder.ulb.tu-darmstadt.de/search?f.K03=Pharmacy,equals&spc.page=1) offers a selection of pharmacy-specific ELNs. How to choose the right ELN for the research group can be read [here](https://knowledgebase.nfdi4chem.de/knowledge_base/docs/choose_eln/). From 599f71d9f0e2051001fc681af8894ddb961735e5 Mon Sep 17 00:00:00 2001 From: Ted-Bender <122031815+Ted-Bender@users.noreply.github.com> Date: Fri, 23 May 2025 08:30:01 +0200 Subject: [PATCH 4/7] Update 40_physical_chemistry.mdx --- docs/10_domains/40_physical_chemistry.mdx | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/docs/10_domains/40_physical_chemistry.mdx b/docs/10_domains/40_physical_chemistry.mdx index 44ffdcdd..5ffd7cc1 100644 --- a/docs/10_domains/40_physical_chemistry.mdx +++ b/docs/10_domains/40_physical_chemistry.mdx @@ -20,7 +20,9 @@ As mentioned, the data produced in physical chemistry and its diverse sub-discip ## ELNs and Other Tools -For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. Many universities supply tools and templates for DMPs (see the [respective article](/docs/dmp) for more information). +For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) +and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. An [electronic lab notebooks (ELN)](/docs/eln) helps in the day-to-day planning and structured documentation of experiments, while some also assist in data workflow management. For disciplines with diverse research, ELNs must be flexible and customizable. Certain universities may have a central option, while each research group may chose what best fits their needs and resources if they are able to host or procure their own solution. The [ELN-Finder](https://eln-finder.ulb.tu-darmstadt.de/search?f.K03=Pharmacy,equals&spc.page=1) lists many options and the article on [choosing an ELN](/docs/choose_eln) provides further assistance: From 51070cd1443e11fe1d37029004f022125e4534a8 Mon Sep 17 00:00:00 2001 From: Ted-Bender <122031815+Ted-Bender@users.noreply.github.com> Date: Fri, 23 May 2025 08:30:14 +0200 Subject: [PATCH 5/7] Update 60_synthetic_chemistry.mdx --- docs/10_domains/60_synthetic_chemistry.mdx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/10_domains/60_synthetic_chemistry.mdx b/docs/10_domains/60_synthetic_chemistry.mdx index 772232e9..7c82068d 100644 --- a/docs/10_domains/60_synthetic_chemistry.mdx +++ b/docs/10_domains/60_synthetic_chemistry.mdx @@ -26,7 +26,7 @@ Overall, [metadata](/docs/metadata/) should always be included when collecting a For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. Many universities supply tools and templates for DMPs (see the [respective article](/docs/dmp) for more information). +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. If you want your data to comply with the [FAIR principles](/docs/fair/) it can be very tedious and extremely time consuming if you try to apply the FAIR principles to your data retrospectively if your existing workflows involve a large degree of analogue documentation (e.g. paper lab notebooks). The reality is that you need tools to take care of certain aspects of the FAIR principles automatically so you don’t have to apply them manually each time. [Electronic Lab Notebooks (ELNs)](/docs/eln/) are very powerful tools that can help you with this. Depending on what ELN you use, the [metadata](/docs/metadata/) can be automatically assigned in both human and [machine-readable formats](/docs/format_standards/). Furthermore, some ELNs can automatically generate interoperable [open file formats](/docs/format_standards/#format-standards-in-chemistry) for your analytical data. Choosing the right ELN can be challenging and this process should be thought about and carried out carefully. You can find out more on [how to choose the right ELN here](/docs/choose_eln/): From 8bb9ae5f386f5b9cb93105022c3501f2a3e8c4b8 Mon Sep 17 00:00:00 2001 From: Johannes Liermann Date: Thu, 4 Sep 2025 16:28:04 +0200 Subject: [PATCH 6/7] chore: rephrase and reformat link --- docs/10_domains/10_analytical_chemistry.mdx | 2 +- docs/10_domains/20_electrochemistry.mdx | 2 +- docs/10_domains/30_pharmaceutical_chemistry.mdx | 2 +- docs/10_domains/40_physical_chemistry.mdx | 2 +- docs/10_domains/60_synthetic_chemistry.mdx | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/docs/10_domains/10_analytical_chemistry.mdx b/docs/10_domains/10_analytical_chemistry.mdx index 4a325bae..2919125d 100644 --- a/docs/10_domains/10_analytical_chemistry.mdx +++ b/docs/10_domains/10_analytical_chemistry.mdx @@ -28,7 +28,7 @@ Some open data formats are available for specific data types, such as mass spect For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. General chemistry ELNs can typically be used for analytical chemistry data and may be well suited to your research topic. However, there are also specialised tools that are tailored to the needs of analytical chemists. These tools often include features for managing instrument data, processing raw data files and visualising results. They may also include tools for chemometric analysis. diff --git a/docs/10_domains/20_electrochemistry.mdx b/docs/10_domains/20_electrochemistry.mdx index a185a40a..8ff3b0e8 100644 --- a/docs/10_domains/20_electrochemistry.mdx +++ b/docs/10_domains/20_electrochemistry.mdx @@ -32,7 +32,7 @@ Further data evaluation can yield any kind of time series data or imaging data. For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. An [electronic lab notebook (ELN)](/docs/eln) helps in the day-to-day planning and structured documentation of experiments, while some also assist in data workflow management. diff --git a/docs/10_domains/30_pharmaceutical_chemistry.mdx b/docs/10_domains/30_pharmaceutical_chemistry.mdx index c9afc122..9336d479 100644 --- a/docs/10_domains/30_pharmaceutical_chemistry.mdx +++ b/docs/10_domains/30_pharmaceutical_chemistry.mdx @@ -22,7 +22,7 @@ The most common types of data in pharmaceutical/medicinal chemistry can be divid For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. To meet the requirements for FAIR data management, electronic lab notebooks (ELNs) are particularly useful as they can take over many documentation tasks for researchers. The [ELN-Finder](https://eln-finder.ulb.tu-darmstadt.de/search?f.K03=Pharmacy,equals&spc.page=1) offers a selection of pharmacy-specific ELNs. How to choose the right ELN for the research group can be read [here](https://knowledgebase.nfdi4chem.de/knowledge_base/docs/choose_eln/). diff --git a/docs/10_domains/40_physical_chemistry.mdx b/docs/10_domains/40_physical_chemistry.mdx index 5ffd7cc1..45428508 100644 --- a/docs/10_domains/40_physical_chemistry.mdx +++ b/docs/10_domains/40_physical_chemistry.mdx @@ -22,7 +22,7 @@ As mentioned, the data produced in physical chemistry and its diverse sub-discip For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. An [electronic lab notebooks (ELN)](/docs/eln) helps in the day-to-day planning and structured documentation of experiments, while some also assist in data workflow management. For disciplines with diverse research, ELNs must be flexible and customizable. Certain universities may have a central option, while each research group may chose what best fits their needs and resources if they are able to host or procure their own solution. The [ELN-Finder](https://eln-finder.ulb.tu-darmstadt.de/search?f.K03=Pharmacy,equals&spc.page=1) lists many options and the article on [choosing an ELN](/docs/choose_eln) provides further assistance: diff --git a/docs/10_domains/60_synthetic_chemistry.mdx b/docs/10_domains/60_synthetic_chemistry.mdx index 7c82068d..0cd44723 100644 --- a/docs/10_domains/60_synthetic_chemistry.mdx +++ b/docs/10_domains/60_synthetic_chemistry.mdx @@ -26,7 +26,7 @@ Overall, [metadata](/docs/metadata/) should always be included when collecting a For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem is proud to present an RDMO template specifically tailored to the needs of chemists, see https://rdmo.nfdi4chem.de/. +These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. If you want your data to comply with the [FAIR principles](/docs/fair/) it can be very tedious and extremely time consuming if you try to apply the FAIR principles to your data retrospectively if your existing workflows involve a large degree of analogue documentation (e.g. paper lab notebooks). The reality is that you need tools to take care of certain aspects of the FAIR principles automatically so you don’t have to apply them manually each time. [Electronic Lab Notebooks (ELNs)](/docs/eln/) are very powerful tools that can help you with this. Depending on what ELN you use, the [metadata](/docs/metadata/) can be automatically assigned in both human and [machine-readable formats](/docs/format_standards/). Furthermore, some ELNs can automatically generate interoperable [open file formats](/docs/format_standards/#format-standards-in-chemistry) for your analytical data. Choosing the right ELN can be challenging and this process should be thought about and carried out carefully. You can find out more on [how to choose the right ELN here](/docs/choose_eln/): From c47e644135463d66c4f03088ed8f3ff69514dfb2 Mon Sep 17 00:00:00 2001 From: Johannes Liermann Date: Thu, 4 Sep 2025 16:29:10 +0200 Subject: [PATCH 7/7] chore: remove unnec. breaks --- docs/10_domains/40_physical_chemistry.mdx | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/docs/10_domains/40_physical_chemistry.mdx b/docs/10_domains/40_physical_chemistry.mdx index 45428508..582fda9e 100644 --- a/docs/10_domains/40_physical_chemistry.mdx +++ b/docs/10_domains/40_physical_chemistry.mdx @@ -20,9 +20,7 @@ As mentioned, the data produced in physical chemistry and its diverse sub-discip ## ELNs and Other Tools -For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) -and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. -These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. +For effective data management, software tools should be selected in a uniform manner within a project or research group with the aim to [organize](/docs/data_organisation) and streamline workflows. This involves establishing clear usage guidelines, including metadata templates drawn from minimum information standards for a given method, where available. These should be outlined in a [data management plan (DMP)](/docs/dmp) for each project. NFDI4Chem provides an [https://rdmo.nfdi4chem.de/](RDMO template) specifically tailored to the needs of chemists. An [electronic lab notebooks (ELN)](/docs/eln) helps in the day-to-day planning and structured documentation of experiments, while some also assist in data workflow management. For disciplines with diverse research, ELNs must be flexible and customizable. Certain universities may have a central option, while each research group may chose what best fits their needs and resources if they are able to host or procure their own solution. The [ELN-Finder](https://eln-finder.ulb.tu-darmstadt.de/search?f.K03=Pharmacy,equals&spc.page=1) lists many options and the article on [choosing an ELN](/docs/choose_eln) provides further assistance: