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1 | 1 | Package: SCWorkflow |
2 | 2 | Title: SCWorkflow from NIDAP |
3 | | -Version: 0.0.0.1 |
4 | | -Authors@R: |
5 | | - person("First", "Last", , "first.last@example.com", role = c("aut", "cre"), |
6 | | - comment = c(ORCID = "YOUR-ORCID-ID")) |
7 | | -Description: Pakcaging NIDAP templates. |
| 3 | +Version: 1.0.0.0 |
| 4 | +Authors@R: c(person("Maggie", "Cam", email = "maggie.cam@nih.gov", role = "aut", comment = c(ORCID = "0000-0001-8190-9766")), |
| 5 | + person("Thomas", "Meyer", email = "thomas.meyer@nih.gov", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7185-5597")), |
| 6 | + person("Jing", "Bian", email = "bianjh@nih.gov", role = "aut", comment = c(ORCID = "0000-0001-7109-716X")), |
| 7 | + person("Alexandra", "Michalowski", email = "michaloa@mail.nih.gov", role = "aut", comment = c(ORCID = "0000-0001-9259-6101")), |
| 8 | + person("Alexei", "Lobanov", email = "alexei.lobanov@nih.gov", role = "aut", comment = c(ORCID = "0000-0002-9883-4374")), |
| 9 | + person("Philip", "Homan", email = "philip.homan@nih.gov", role = "aut", comment = c(ORCID = "0000-0002-3389-4931")), |
| 10 | + person("Rui", "He", email = "rui.he@nih.gov", role = "aut")) |
| 11 | +Description: A set of functions for analyzing single-cell RNA-seq data using the |
| 12 | + Seurat workflow. The user provides H5 files containing the results of the |
| 13 | + upstream processing through CellRanger, and the package functions allow for |
| 14 | + the QC, filtering, normalization, annotation, differential gene expression, |
| 15 | + and further visualizations and analysis based on user input. This package can |
| 16 | + be run both in a docker container and in user-friendly web-based interactive |
| 17 | + notebooks (NIDAP, Palantir Foundry). |
8 | 18 | License: MIT |
9 | 19 | Encoding: UTF-8 |
10 | 20 | Roxygen: list(markdown = TRUE) |
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