Removed Andrea update header and paths for scripts to use in nextflow script

Author: aolveraNIH

AWS/Submodule_2_annotation_only.ipynb

@@ -287,15 +287,6 @@
     "! ls -l ./<Your-Output-Directory-annotation-only>"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "id": "1b3ac17d",
-   "metadata": {},
-   "source": [
-    "----\n",
-    "# Andrea, please update this part"
-   ]
-  },
   {
    "cell_type": "markdown",
    "id": "337b1049",

AWS/Submodule_3_basic_assembly.ipynb

@@ -203,7 +203,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "! nextflow run main.nf --input test_samplesheet.csv -profile aws --run_mode full"
+    "! nextflow run  ../denovotranscript/main.nf --input ../denovotranscript/test_samplesheet_aws.csv -profile aws --run_mode full"
    ]
   },
   {