Updated last part of busco analysis

Author: aolveraNIH

GoogleCloud/Submodule_2_annotation_only.ipynb

@@ -414,6 +414,17 @@
     "! echo $THREADS"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "ac8e5dc6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# make the output folder \n",
+    "!mkdir -p ./buscoOutput"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -529,9 +540,9 @@
    "outputs": [],
    "source": [
     "! docker run -it --rm --volume /home:/home quay.io/biocontainers/busco:5.4.3--pyhdfd78af_0 busco \\\n",
-    "    -i /home/ec2-user/SageMaker/Transcriptome-Assembly-Refinement-and-Applications/GoogleCloud/resources/trans/Pseudacris_regilla_GAEI01.1.fa \\\n",
+    "    -i /home/jupyter/resources/trans/Pseudacris_regilla_GAEI01.1.fa \\\n",
     "    -l vertebrata_odb10 -o GAEI01_busco_vertebrata \\\n",
-    "    --out_path /home/ec2-user/SageMaker/Transcriptome-Assembly-Refinement-and-Applications/GoogleCloud/buscoOutpu -m tran -c $THREADS"
+    "    --out_path ./buscoOutput -m tran -c $THREADS"
    ]
   },
   {