Done from my side! (Hadi)

Author: hadiparsianNIH

AWS/Submodule_2_annotation_only.ipynb

@@ -46,10 +46,10 @@
     "\n",
     "**1. Software/Environment:**\n",
     "\n",
-    "*   Jupyter Notebook (Python kernel)\n",
+    "*   Jupyter Notebook in AWS SageMaker AI (Python kernel)\n",
     "*   AWS CLI (configured)\n",
     "*   Nextflow (installed via `mamba`, switch kernel to `conda_nextflow`)\n",
-    "*   Docker (running, user permissions correct)\n",
+    "*   Docker\n",
     "*   `jupytercards` (install via `pip`)\n",
     "\n",
     "**2. Enabled APIs:**\n",

AWS/Submodule_3_basic_assembly.ipynb

@@ -46,10 +46,10 @@
     "\n",
     "**1. Software/Environment:**\n",
     "\n",
-    "*   Jupyter Notebook (Python kernel)\n",
+    "*   Jupyter Notebook in Google Could Vertex AI (Python kernel)\n",
     "*   Google Cloud CLI (configured)\n",
     "*   Nextflow (installed via `mamba`)\n",
-    "*   Docker (running, user permissions correct)\n",
+    "*   Docker\n",
     "*   `jupytercards` (install via `pip`)\n",
     "\n",
     "**2. Enabled APIs:**\n",
@@ -183,7 +183,7 @@
    "id": "4506a617",
    "metadata": {},
    "source": [
-    "#### Change the parameters as desired in `gbatch` profile inside `../denovotrascript/nextflow.config` file\n",
+    "#### Change the parameters as desired in `gbatch` profile inside `../denovotrascript/nextflow.config` file:\n",
     " - Google Cloud project ID\n",
     " - Google Cloud region \n",
     " - Nextflow work directory\n",