changed cell from markdown to code

Author: aolveraNIH

AWS/Submodule_2_annotation_only.ipynb

@@ -286,16 +286,18 @@
    ]
   },
   {
-   "cell_type": "markdown",
+   "cell_type": "code",
+   "execution_count": null,
    "id": "c46757a3",
    "metadata": {},
+   "outputs": [],
    "source": [
     "# replace batch bucket name in nextflow configuration file\n",
-    "! sed -i \"s/aws-batch-nigms-batch-bucket-/$BUCKET_NAME/g\" nextflow.config\n",
+    "! sed -i \"s/aws-batch-nigms-batch-bucket-/$BUCKET_NAME/g\" ../denovotranscript/nextflow.config\n",
     "# replace job queue name in configuration file \n",
-    "! sed -i \"s/aws-batch-nigms-JobQueue/$AWS_QUEUE/g\" nextflow.config\n",
+    "! sed -i \"s/aws-batch-nigms-JobQueue/$AWS_QUEUE/g\" ../denovotranscipt/nextflow.config\n",
     "# replace the region placeholder with the region you are in \n",
-    "! sed -i \"s/aws-region/$AWS_REGION/g\" nextflow.config"
+    "! sed -i \"s/aws-region/$AWS_REGION/g\" ../denovotranscipt/nextflow.config"
    ]
   },
   {