Set path to metadata for each sequencer in config

Author: ssjunnebo

dataflow_transfer/run_classes/generic_runs.py

@@ -25,8 +25,7 @@ def __init__(self, run_dir, configuration):
             self.run_dir, ".metadata_rsync_exitcode"
         )
         self.metadata_destination = os.path.join(
-            self.configuration.get("metadata_archive"),
-            getattr(self, "run_type", None),
+            self.sequencer_config.get("metadata_archive"),
             self.run_id,
         )
         self.final_rsync_exitcode_file = os.path.join(

dataflow_transfer/tests/test_run_classes.py

@@ -12,7 +12,6 @@ def novaseqxplus_testobj(tmp_path):
     config = {
         "log": {"file": "test.log"},
         "transfer_details": {"user": "testuser", "host": "testhost"},
-        "metadata_archive": "/data/metadata_archive",
         "statusdb": {
             "username": "dbuser",
             "password": "dbpass",
@@ -23,6 +22,7 @@ def novaseqxplus_testobj(tmp_path):
             "NovaSeqXPlus": {
                 "remote_destination": "/data/NovaSeqXPlus",
                 "metadata_for_statusdb": ["RunInfo.xml", "RunParameters.xml"],
+                "metadata_archive": "/data/metadata_archive/NovaSeqXPlus",
                 "ignore_folders": ["nosync"],
                 "remote_rsync_options": ["--chmod=Dg+s,g+rw"],
                 "metadata_rsync_options": [
@@ -44,7 +44,6 @@ def nextseq_testobj(tmp_path):
     config = {
         "log": {"file": "test.log"},
         "transfer_details": {"user": "testuser", "host": "testhost"},
-        "metadata_archive": "/data/metadata_archive",
         "statusdb": {
             "username": "dbuser",
             "password": "dbpass",
@@ -55,6 +54,7 @@ def nextseq_testobj(tmp_path):
             "NextSeq": {
                 "remote_destination": "/data/NextSeq",
                 "metadata_for_statusdb": ["RunInfo.xml", "RunParameters.xml"],
+                "metadata_archive": "/data/metadata_archive/NextSeq",
                 "ignore_folders": ["nosync"],
                 "remote_rsync_options": ["--chmod=Dg+s,g+rw"],
                 "metadata_rsync_options": [
@@ -76,7 +76,6 @@ def miseqseq_testobj(tmp_path):
     config = {
         "log": {"file": "test.log"},
         "transfer_details": {"user": "testuser", "host": "testhost"},
-        "metadata_archive": "/data/metadata_archive",
         "statusdb": {
             "username": "dbuser",
             "password": "dbpass",
@@ -87,6 +86,7 @@ def miseqseq_testobj(tmp_path):
             "MiSeq": {
                 "remote_destination": "/data/MiSeq",
                 "metadata_for_statusdb": ["RunInfo.xml", "RunParameters.xml"],
+                "metadata_archive": "/data/metadata_archive/MiSeq",
                 "ignore_folders": ["nosync"],
                 "remote_rsync_options": ["--chmod=Dg+s,g+rw"],
                 "metadata_rsync_options": [
@@ -108,7 +108,6 @@ def miseqseqi100_testobj(tmp_path):
     config = {
         "log": {"file": "test.log"},
         "transfer_details": {"user": "testuser", "host": "testhost"},
-        "metadata_archive": "/data/metadata_archive",
         "statusdb": {
             "username": "dbuser",
             "password": "dbpass",
@@ -119,6 +118,7 @@ def miseqseqi100_testobj(tmp_path):
             "MiSeqi100": {
                 "remote_destination": "/data/MiSeqi100",
                 "metadata_for_statusdb": ["RunInfo.xml", "RunParameters.xml"],
+                "metadata_archive": "/data/metadata_archive/MiSeqi100",
                 "ignore_folders": ["nosync"],
                 "remote_rsync_options": ["--chmod=Dg+s,g+rw"],
                 "metadata_rsync_options": [