remove side letter from FCIDs to match what's scanned in the lab

Author: ssjunnebo

dataflow_transfer/run_classes/element_runs.py

@@ -9,9 +9,6 @@ class ElementRun(Run):
     def __init__(self, run_dir, configuration):
         super().__init__(run_dir, configuration)
         self.final_file = "RunUploaded.json"
-        self.flowcell_id = self.run_id.split("_")[
-            -1
-        ]  # This is true for all except Teton runs
 
 
 @register_run_class
@@ -24,4 +21,8 @@ def __init__(self, run_dir, configuration):
         self.run_id_format = (
             r"^\d{8}_AV\d{6}_(A|BP)\d{10}$"  # 20251007_AV242106_A2507535225
         )
+        self.flowcell_id = self.run_id.split("_")[-1][1:]  # 2507535225
         super().__init__(run_dir, configuration)
+
+
+# TODO: Add Teton run class

dataflow_transfer/run_classes/illumina_runs.py

@@ -9,7 +9,6 @@ class IlluminaRun(Run):
     def __init__(self, run_dir, configuration):
         super().__init__(run_dir, configuration)
         self.final_file = "CopyComplete.txt"
-        self.flowcell_id = self.run_id.split("_")[-1]
 
 
 @register_run_class
@@ -22,6 +21,7 @@ def __init__(self, run_dir, configuration):
         self.run_id_format = (
             r"^\d{8}_[A-Z0-9]+_\d{4}_[A-Z0-9]+$"  # 20251010_LH00202_0284_B22CVHTLT1
         )
+        self.flowcell_id = self.run_id.split("_")[-1][1:]  # 22CVHTLT1
         super().__init__(run_dir, configuration)
 
 
@@ -35,6 +35,7 @@ def __init__(self, run_dir, configuration):
         self.run_id_format = (
             r"^\d{6}_[A-Z0-9]+_\d{3}_[A-Z0-9]+$"  # 251015_VH00203_572_AAHFHCCM5
         )
+        self.flowcell_id = self.run_id.split("_")[-1]  # AAHFHCCM5
         super().__init__(run_dir, configuration)
 
 
@@ -48,6 +49,7 @@ def __init__(self, run_dir, configuration):
         self.run_id_format = (
             r"^\d{6}_[A-Z0-9]+_\d{4}_[A-Z0-9\-]+$"  # 251015_M01548_0646_000000000-M6D7K
         )
+        self.flowcell_id = self.run_id.split("_")[-1]  # 000000000-M6D7K
         super().__init__(run_dir, configuration)
 
 
@@ -59,4 +61,5 @@ class MiSeqi100Run(IlluminaRun):
 
     def __init__(self, run_dir, configuration):
         self.run_id_format = r"^\d{8}_[A-Z0-9]+_\d{4}_[A-Z0-9]{10}-SC3$"  # 20260128_SH01140_0002_ASC2150561-SC3
+        self.flowcell_id = self.run_id.split("_")[-1][1:]  # SC2150561-SC3
         super().__init__(run_dir, configuration)