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Add FC examples
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Lines changed: 7 additions & 7 deletions

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dataflow_transfer/tests/test_run_classes.py

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -142,21 +142,21 @@ def get_db_doc(self, ddoc, view, run_id):
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def get_regex_pattern(self, run_family, run_type):
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if run_family == "Illumina":
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if run_type == "NovaSeqXPlus":
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if run_type == "NovaSeqXPlus": # 20251010_LH00202_0284_B22CVHTLT1
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return r"^(?P<date>\d{8})_(?P<instrument>[A-Z0-9]+)_\d{4}_(?P<position>(A|B))(?P<flowcell_id>[A-Z0-9]+)$"
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elif run_type == "NextSeq":
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elif run_type == "NextSeq": # 251015_VH00203_572_AAHFHCCM5
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return r"^(?P<date>\d{6})_(?P<instrument>[A-Z0-9]+)_\d{3}_(?P<flowcell_id>[A-Z0-9]+)$"
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elif run_type == "MiSeq":
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elif run_type == "MiSeq": # 251015_M01548_0646_000000000-M6D7K
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return r"^(?P<date>\d{6})_(?P<instrument>[A-Z0-9]+)_\d{4}_(?P<flowcell_id>[A-Z0-9\-]+)$"
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elif run_type == "MiSeqi100":
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elif run_type == "MiSeqi100": # 20260128_SH01140_0002_ASC2150561-SC3
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return r"^(?P<date>\d{8})_(?P<instrument>[A-Z0-9]+)_\d{4}_A(?P<flowcell_id>[A-Z0-9]{9}-SC3)$"
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elif run_family == "ONT":
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if run_type == "PromethION":
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if run_type == "PromethION": # 20251015_1051_3B_PBG60686_0af3a2e0
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return r"^(?P<date>\d{8})_(?P<time>\d{4})_(?P<position>[A-Z0-9]{2})_(?P<flowcell_id>P[A-Z0-9]+)_(?P<run_hash>[a-f0-9]{8})$"
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elif run_type == "MinION":
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elif run_type == "MinION": # 20240229_1404_MN19414_ASH657_7a74bf8f
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return r"^(?P<date>\d{8})_(?P<time>\d{4})_(?P<position>MN[A-Z0-9]+)_(?P<flowcell_id>[A-Z0-9]+)_(?P<run_hash>[a-f0-9]{8})$"
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elif run_family == "Element":
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if run_type == "AVITI":
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if run_type == "AVITI": # 20251007_AV242106_A2507535225
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return r"^(?P<date>\d{8})_(?P<instrument>AV\d{6})_(?P<position>(A|B))(?P<flowcell_id>\d{10})$"
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return None
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