diff --git a/src/gencore.cpp b/src/gencore.cpp
index 092e235..a775c4c 100644
--- a/src/gencore.cpp
+++ b/src/gencore.cpp
@@ -277,7 +277,11 @@ void Gencore::consensus(){
         mProperClustersFinished = true;
         finishConsensus(mProperClusters);
     }
-    
+
+    // Flush any reads remaining in mOutSet so that mPostStats is fully populated
+    // before report() is called
+    outputOutSet();
+
     //finishConsensus(mUnProperClusters);
 
     bam_destroy1(b);