From 4fd5d719e0f8468905e2b5adc6dbff8773bf4205 Mon Sep 17 00:00:00 2001
From: Steven Strong <steven.strong@adelabio.com>
Date: Fri, 27 Mar 2026 11:39:18 -0600
Subject: [PATCH] fix last ref coverage

---
 src/gencore.cpp | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/src/gencore.cpp b/src/gencore.cpp
index 092e235..a775c4c 100644
--- a/src/gencore.cpp
+++ b/src/gencore.cpp
@@ -277,7 +277,11 @@ void Gencore::consensus(){
         mProperClustersFinished = true;
         finishConsensus(mProperClusters);
     }
-    
+
+    // Flush any reads remaining in mOutSet so that mPostStats is fully populated
+    // before report() is called
+    outputOutSet();
+
     //finishConsensus(mUnProperClusters);
 
     bam_destroy1(b);