[docs] Update stack visual and doc index

Author: benjimaclellan

README.md

@@ -41,93 +41,99 @@ pip install .[docs]
 mkdocs serve
 ```
 
-
+### Where in the stack
 ```mermaid
 block-beta
    columns 3
-   
+
    block:Interface
        columns 1
        InterfaceTitle("<i><b>Interfaces</b><i/>")
-       InterfaceDigital["<b>Digital Interface</b>\nQuantum circuits with discrete gates"] 
+       InterfaceDigital["<b>Digital Interface</b>\nQuantum circuits with discrete gates"]
        space
-       InterfaceAnalog["<b>Analog Interface</b>\n Continuous-time evolution with Hamiltonians"] 
+       InterfaceAnalog["<b>Analog Interface</b>\n Continuous-time evolution with Hamiltonians"]
        space
        InterfaceAtomic["<b>Atomic Interface</b>\nLight-matter interactions between lasers and ions"]
        space
     end
-    
+
     block:IR
        columns 1
        IRTitle("<i><b>IRs</b><i/>")
-       IRDigital["Quantum circuit IR\nopenQASM, LLVM+QIR"] 
+       IRDigital["Quantum circuit IR\nopenQASM, LLVM+QIR"]
        space
        IRAnalog["openQSIM"]
        space
        IRAtomic["openAPL"]
        space
     end
-    
+
     block:Emulator
        columns 1
        EmulatorsTitle("<i><b>Classical Emulators</b><i/>")
-       
-       EmulatorDigital["Pennylane, Qiskit"] 
+
+       EmulatorDigital["Pennylane, Qiskit"]
        space
        EmulatorAnalog["QuTiP, QuantumOptics.jl"]
        space
        EmulatorAtomic["TrICal, QuantumIon.jl"]
        space
     end
-    
+
     space
     block:RealTime
        columns 1
        RealTimeTitle("<i><b>Real-Time</b><i/>")
        space
-       RTSoftware["ARTIQ, DAX, OQDAX"] 
+       RTSoftware["ARTIQ, DAX, OQDAX"]
        space
        RTGateware["Sinara Real-Time Control"]
        space
        RTHardware["Lasers, Modulators, Photodetection, Ion Trap"]
        space
-       RTApparatus["Trapped-Ion QPU (<sup>171</sup>Yt<sup>+</sup>, <sup>133</sup>Ba<sup>+</sup>)"]
+       RTApparatus["Trapped-Ion QPU (<sup>171</sup>Yb<sup>+</sup>, <sup>133</sup>Ba<sup>+</sup>)"]
        space
     end
     space
-    
+
    InterfaceDigital --> IRDigital
    InterfaceAnalog --> IRAnalog
    InterfaceAtomic --> IRAtomic
-   
+
    IRDigital --> IRAnalog
    IRAnalog --> IRAtomic
-   
+
    IRDigital --> EmulatorDigital
    IRAnalog --> EmulatorAnalog
    IRAtomic --> EmulatorAtomic
-   
+
    IRAtomic --> RealTimeTitle
-   
+
    RTSoftware --> RTGateware
    RTGateware --> RTHardware
    RTHardware --> RTApparatus
-   
-    classDef title fill:#d6d4d4,stroke:#333,color:#333;
-    classDef digital fill:#E7E08B,stroke:#333,color:#333;
-    classDef analog fill:#E4E9B2,stroke:#333,color:#333;
-    classDef atomic fill:#D2E4C4,stroke:#333,color:#333;
-    classDef realtime fill:#B5CBB7,stroke:#333,color:#333;
-
-    classDef highlight fill:#f2bbbb,stroke:#333,color:#333,stroke-dasharray: 5 5;
-    
+
+   classDef title fill:#23627D,stroke:#141414,color:#FFFFFF;
+   classDef digital fill:#c3e1ee,stroke:#141414,color:#141414;
+   classDef analog fill:#afd7e9,stroke:#141414,color:#141414;
+   classDef atomic fill:#9ccee3,stroke:#141414,color:#141414;
+   classDef realtime fill:#88c4dd,stroke:#141414,color:#141414;
+
+    classDef highlight fill:#F19D19,stroke:#141414,color:#141414,stroke-dasharray: 5 5;
+    classDef normal fill:#fcebcf,stroke:#141414,color:#141414;
+
     class InterfaceTitle,IRTitle,EmulatorsTitle,RealTimeTitle title
     class InterfaceDigital,IRDigital,EmulatorDigital digital
     class InterfaceAnalog,IRAnalog,EmulatorAnalog analog
     class InterfaceAtomic,IRAtomic,EmulatorAtomic atomic
     class RTSoftware,RTGateware,RTHardware,RTApparatus realtime
+
+   class Emulator highlight
+
+   class Interface normal
+   class RealTime normal
+   class IR normal
     
-    class Emulator highlight
 ```
 The tools in this repository allow for self-hosting a server to run
 quantum programs on classical emulators, highlighted in the stack diagram in red. 

docs/index.md

@@ -18,107 +18,102 @@
 [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
 
 
-
-<!-- prettier-ignore -->
-/// admonition | Note
-    type: note
-Welcome to the Open Quantum Design.
-This documentation is still under development, we welcome contributions! © Open Quantum Design
-///
-
-
 ## What's Here
 This repository contains the software needed to submit jobs to a remote, cloud server for classical simulations of quantum programs.
 In addition, it provides a Docker script to self-host a simulation server of the OQD emulator backends.
 
-
-
 ```mermaid
 block-beta
    columns 3
-   
+
    block:Interface
        columns 1
        InterfaceTitle("<i><b>Interfaces</b><i/>")
-       InterfaceDigital["<b>Digital Interface</b>\nQuantum circuits with discrete gates"] 
+       InterfaceDigital["<b>Digital Interface</b>\nQuantum circuits with discrete gates"]
        space
-       InterfaceAnalog["<b>Analog Interface</b>\n Continuous-time evolution with Hamiltonians"] 
+       InterfaceAnalog["<b>Analog Interface</b>\n Continuous-time evolution with Hamiltonians"]
        space
        InterfaceAtomic["<b>Atomic Interface</b>\nLight-matter interactions between lasers and ions"]
        space
     end
-    
+
     block:IR
        columns 1
        IRTitle("<i><b>IRs</b><i/>")
-       IRDigital["Quantum circuit IR\nopenQASM, LLVM+QIR"] 
+       IRDigital["Quantum circuit IR\nopenQASM, LLVM+QIR"]
        space
        IRAnalog["openQSIM"]
        space
        IRAtomic["openAPL"]
        space
     end
-    
+
     block:Emulator
        columns 1
        EmulatorsTitle("<i><b>Classical Emulators</b><i/>")
-       
-       EmulatorDigital["Pennylane, Qiskit"] 
+
+       EmulatorDigital["Pennylane, Qiskit"]
        space
        EmulatorAnalog["QuTiP, QuantumOptics.jl"]
        space
        EmulatorAtomic["TrICal, QuantumIon.jl"]
        space
     end
-    
+
     space
     block:RealTime
        columns 1
        RealTimeTitle("<i><b>Real-Time</b><i/>")
        space
-       RTSoftware["ARTIQ, DAX, OQDAX"] 
+       RTSoftware["ARTIQ, DAX, OQDAX"]
        space
        RTGateware["Sinara Real-Time Control"]
        space
        RTHardware["Lasers, Modulators, Photodetection, Ion Trap"]
        space
-       RTApparatus["Trapped-Ion QPU (<sup>171</sup>Yt<sup>+</sup>, <sup>133</sup>Ba<sup>+</sup>)"]
+       RTApparatus["Trapped-Ion QPU (<sup>171</sup>Yb<sup>+</sup>, <sup>133</sup>Ba<sup>+</sup>)"]
        space
     end
     space
-    
+
    InterfaceDigital --> IRDigital
    InterfaceAnalog --> IRAnalog
    InterfaceAtomic --> IRAtomic
-   
+
    IRDigital --> IRAnalog
    IRAnalog --> IRAtomic
-   
+
    IRDigital --> EmulatorDigital
    IRAnalog --> EmulatorAnalog
    IRAtomic --> EmulatorAtomic
-   
+
    IRAtomic --> RealTimeTitle
-   
+
    RTSoftware --> RTGateware
    RTGateware --> RTHardware
    RTHardware --> RTApparatus
-   
-    classDef title fill:#d6d4d4,stroke:#333,color:#333;
-    classDef digital fill:#E7E08B,stroke:#333,color:#333;
-    classDef analog fill:#E4E9B2,stroke:#333,color:#333;
-    classDef atomic fill:#D2E4C4,stroke:#333,color:#333;
-    classDef realtime fill:#B5CBB7,stroke:#333,color:#333;
-
-    classDef highlight fill:#f2bbbb,stroke:#333,color:#333,stroke-dasharray: 5 5;
-    
+
+   classDef title fill:#23627D,stroke:#141414,color:#FFFFFF;
+   classDef digital fill:#c3e1ee,stroke:#141414,color:#141414;
+   classDef analog fill:#afd7e9,stroke:#141414,color:#141414;
+   classDef atomic fill:#9ccee3,stroke:#141414,color:#141414;
+   classDef realtime fill:#88c4dd,stroke:#141414,color:#141414;
+
+    classDef highlight fill:#F19D19,stroke:#141414,color:#141414,stroke-dasharray: 5 5;
+    classDef normal fill:#fcebcf,stroke:#141414,color:#141414;
+
     class InterfaceTitle,IRTitle,EmulatorsTitle,RealTimeTitle title
     class InterfaceDigital,IRDigital,EmulatorDigital digital
     class InterfaceAnalog,IRAnalog,EmulatorAnalog analog
     class InterfaceAtomic,IRAtomic,EmulatorAtomic atomic
     class RTSoftware,RTGateware,RTHardware,RTApparatus realtime
+
+   class Emulator highlight
+
+   class Interface normal
+   class RealTime normal
+   class IR normal
     
-    class Emulator highlight
 ```
 The tools in this repository allow for self-hosting a server to run
 quantum programs on classical emulators, highlighted in the stack diagram in red.