Prepare for tranquilo 0.1.0 (#19)

Author: timmens

.envs/testenv-linux.yml

@@ -10,7 +10,6 @@ dependencies:
   - pytest  # dev, tests
   - pytest-cov  # tests
   - pytest-xdist  # dev, tests
-  - optimagic  # run, tests
   - numba  # run, tests
   - numpy>=1.17.0  # run, tests
   - pandas  # run, tests

.envs/testenv-others.yml

@@ -9,7 +9,6 @@ dependencies:
   - pytest  # dev, tests
   - pytest-cov  # tests
   - pytest-xdist  # dev, tests
-  - optimagic  # run, tests
   - numba  # run, tests
   - numpy>=1.17.0  # run, tests
   - pandas  # run, tests

.envs/update_envs.py

@@ -40,7 +40,9 @@ def main():
     docs_env.append("      - -e ../")  # add local installation
 
     # write environments
-    for name, env in zip(["linux", "others"], [test_env_linux, test_env_others]):
+    for name, env in zip(
+        ["linux", "others"], [test_env_linux, test_env_others], strict=True
+    ):
         Path(f".envs/testenv-{name}.yml").write_text("\n".join(env) + "\n")
 
 

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ repos:
       - id: check-useless-excludes
         # - id: identity  # Prints all files passed to pre-commits. Debugging.
   - repo: https://github.com/lyz-code/yamlfix
-    rev: 1.9.0
+    rev: 1.19.0
     hooks:
       - id: yamlfix
   - repo: local
@@ -18,7 +18,7 @@ repos:
         always_run: true
         require_serial: true
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v6.0.0
     hooks:
       - id: check-added-large-files
         args:
@@ -46,84 +46,61 @@ repos:
           - --branch
           - main
       - id: trailing-whitespace
+        exclude: docs/
       - id: check-ast
-      - id: check-docstring-first
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.30.0
+    rev: v1.37.1
     hooks:
       - id: yamllint
-  - repo: https://github.com/psf/black
-    rev: 23.3.0
+  - repo: https://github.com/PyCQA/docformatter
+    rev: v1.7.7
     hooks:
-      - id: black
-        language_version: python3.10
-  - repo: https://github.com/asottile/blacken-docs
-    rev: 1.13.0
-    hooks:
-      - id: blacken-docs
-#   - repo: https://github.com/PyCQA/docformatter
-#     rev: v1.5.1
-#     hooks:
-#       - id: docformatter
-#         args:
-#           - --in-place
-#           - --wrap-summaries
-#           - '88'
-#           - --wrap-descriptions
-#           - '88'
-#           - --blank
-  - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.261
+      - id: docformatter
+        args:
+          - --in-place
+          - --wrap-summaries
+          - '88'
+          - --wrap-descriptions
+          - '88'
+          - --blank
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.14.0
     hooks:
+      # Run the linter.
       - id: ruff
-      #   args:
-      #     - --verbose
-  # - repo: https://github.com/kynan/nbstripout
-  #   rev: 0.6.1
-  #   hooks:
-  #     - id: nbstripout
-  #       args:
-  #         - --extra-keys
-  #         - metadata.kernelspec metadata.language_info.version metadata.vscode
-  - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.0
-    hooks:
-      - id: nbqa-black
-      - id: nbqa-ruff
+        types_or:
+          - python
+          - pyi
+          - jupyter
+        args:
+          - --fix
+      # Run the formatter.
+      - id: ruff-format
+        types_or:
+          - python
+          - pyi
+          - jupyter
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.16
+    rev: 0.7.22
     hooks:
       - id: mdformat
         additional_dependencies:
           - mdformat-gfm
-          - mdformat-black
+          - mdformat-ruff
         args:
           - --wrap
           - '88'
         files: (README\.md)
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.16
+    rev: 0.7.22
     hooks:
       - id: mdformat
         additional_dependencies:
           - mdformat-myst
-          - mdformat-black
+          - mdformat-ruff
         args:
           - --wrap
           - '88'
         files: (docs/.)
-  - repo: https://github.com/asottile/setup-cfg-fmt
-    rev: v2.2.0
-    hooks:
-      - id: setup-cfg-fmt
-  - repo: https://github.com/mgedmin/check-manifest
-    rev: '0.49'
-    hooks:
-      - id: check-manifest
-        args:
-          - --no-build-isolation
-        additional_dependencies:
-          - setuptools-scm
-          - toml
 ci:
   autoupdate_schedule: monthly

docs/rtd_environment.yml

@@ -11,7 +11,6 @@ dependencies:
   - optimagic
   - ipython
   - ipython_genutils
-  - joblib
   - matplotlib
   - myst-nb
   - numpy

docs/source/conf.py

@@ -66,7 +66,6 @@
     "cloudpickle",
     "cyipopt",
     "fides",
-    "joblib",
     "nlopt",
     "pandas",
     "pytest",

environment.yml

@@ -6,15 +6,12 @@ channels:
 dependencies:
   - python=3.10  # dev
   - jupyterlab  # dev, docs
-  - nb_black  # dev, docs
-  - pdbpp  # dev
   - pip  # dev, tests, docs
   - pytest  # dev, tests
   - pytest-cov  # tests
   - pytest-xdist  # dev, tests
-  - setuptools_scm  # dev
+  - hatch  # dev
   - toml  # dev
-  - optimagic  # run, tests
   - numba  # run, tests
   - numpy>=1.17.0  # run, tests
   - pandas  # run, tests
@@ -27,8 +24,7 @@ dependencies:
   - sphinx-panels  # docs
   - sphinxcontrib-bibtex  # docs
   - pip:  # dev, tests, docs
-      - black  # dev
-      - blackcellmagic  # dev
       - kaleido  # dev, tests
       - pre-commit  # dev
+      - pdbp  # dev
       - -e .  # dev