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Run validator for JSON-LD
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‎.github/workflows/validate_schema.yml‎

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uses: actions/setup-node@v4
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with:
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node-version: 20.x
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- run: pip install uv
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- run: npm install -g ajv-cli ajv-formats
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- run: ajv compile --spec draft2020 -c ajv-formats -s schemas/**/schema.json
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- run: uv run --no-project bin/validator.py
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update-latest-schema:
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runs-on: ubuntu-latest

‎README.md‎

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@@ -29,6 +29,12 @@ To run your changed schema against a JSON definition:
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ajv validate --spec draft2020 -c ajv-formats -s schemas/v1/schema.json -d brazil_dengue.json
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```
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To run JSON-LD validation, you will need [uv](https://docs.astral.sh/uv/) installed. Then run:
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```bash
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uv run --no-project bin/validator.py
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```
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If you propose any changes, update the [CHANGELOG](CHANGELOG.md) accordingly.
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## Citing & Authors

‎bin/extremetemperaturesheat_argentina_jsonld.json‎

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{
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"id": "https://opensyndrome.org/definitions/extremetemperaturesheat_argentina_1.0.0",
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"@type": "osd:CaseDefinition",
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"title": "Heat Exposure",
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"description": "Case definition for suspected heat exposure in individuals with history of extreme heat exposure during Early Temperature Extreme Alert by National Meteorological Service, and clinical symptoms attributable to high body temperature (39°C or higher) and 2 or more of the following: sweating, nausea/vomiting, hypotension, tachycardia, tachypnea, altered consciousness, seizures, fainting. In infants: excessive sweating, irritated skin due to sweating.",
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"scope": "specific",
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"category": "suspected",
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"version": "1.0.0",
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"open_syndrome_version": "1.0.0",
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"location": "Argentina",
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"language": "English",
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"organization": "Ministerio de Salud",
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"inclusion_criteria": [
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{
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"type": "criterion",
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"logical_operator": "AND",
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"values": [
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{
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"type": "symptom",
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"name": "High body temperature",
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"attribute": "body_temperature",
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"operator": ">=",
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"value": 39,
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"description": "Temperature measured in celsius",
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"ontology_id": "hpo:0002045"
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},
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{
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"type": "criterion",
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"logical_operator": "AT_LEAST",
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"logical_operator_arguments": [
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2
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],
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"values": [
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{
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"type": "symptom",
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"name": "Warm skin",
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"ontology_id": "hpo:0032506"
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},
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{
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"type": "symptom",
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"name": "Sweating",
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"ontology_id": "hpo:0000975"
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},
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{
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"type": "symptom",
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"name": "Nausea/vomiting",
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"ontology_id": "hpo:0002017"
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},
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{
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"type": "symptom",
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"name": "Hypotension",
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"ontology_id": "hpo:0002615"
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},
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{
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"type": "symptom",
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"name": "Tachycardia",
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"ontology_id": "hpo:0001649"
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},
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{
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"type": "symptom",
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"name": "Tachypnea",
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"ontology_id": "hpo:0002789"
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},
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{
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"type": "symptom",
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"name": "Altered consciousness",
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"ontology_id": "hpo:0004372"
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},
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{
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"type": "symptom",
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"name": "Seizures",
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"ontology_id": "hpo:0001250"
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},
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{
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"type": "symptom",
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"name": "Fainting",
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"ontology_id": "hpo:0001279"
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},
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{
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"type": "symptom",
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"name": "Excessive sweating (infants)",
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"description": "Irritated skin due to sweating (infants)",
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"ontology_id": "hpo:0000975"
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}
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]
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}
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]
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}
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],
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"published_in": "https://opensyndrome.org",
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"published_at": "2025-02-08T12:20:55Z",
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"published_by": [
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"Open Syndrome Initiative"
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],
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"notes": [
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"ICD-10 code HEAT: X30 (Exposure to excessive natural heat), T67 (Effects of heat and light)"
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],
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"references": [
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{
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"url": "https://www.argentina.gob.ar/sites/default/files/2019/10/msal-manual_de_normas_y_procedimientos_de_vigilancia_y_control_de_eno_2022.pdf"
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}
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],
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"status": "draft",
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"human_readable_definition": "Toda persona con antecedentes de\nexposición a calor extremo en circunstancia de Alerta Temprana por Temperatura\nExtrema (calor) del Servicio Meteorológico Nacional, y sintomatología clínica\natribuible - Temperatura corporal mayor o igual a 39 ºC y 2 o más de los siguientes\nsíntomas, a saber:\nSignos y síntomas atribuibles: piel caliente, sudoración abundante en un primer\nmomento o escasa, náuseas y/o vómitos, hipotensión, taquicardia y taquipnea,\nalteración del estado de conciencia, convulsiones, desmayo. En bebés: sudoración\nabundante, piel irritada por sudor.",
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"target_public_health_threats": [
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"Heat",
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"mondo:0020674"
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],
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"keywords": [
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"Heat",
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"South America",
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"Climate-related"
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],
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"definition_type": "case_definition",
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"@context": "https://opensyndrome.org/schema/v1/context.jsonld"
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}

‎bin/validator.py‎

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# /// script
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# requires-python = ">=3.12"
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# dependencies = [
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# "jsonschema>=4.26.0",
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# "pyld>=2.0.4",
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# ]
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# ///
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import json
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from jsonschema import validate, exceptions
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from pyld import jsonld
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# TODO download from definitions in the future
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with open('bin/extremetemperaturesheat_argentina_jsonld.json') as f:
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doc_json = json.load(f)
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with open('schemas/v1/schema.json') as f:
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schema = json.load(f)
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print("--- JSON schema validation ---")
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try:
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validate(instance=doc_json, schema=schema)
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print("JSON Schema OK")
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except exceptions.ValidationError as err:
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print(f"Validation failed: {err.message} - {err.json_path}")
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print("\n--- JSON-LD validation ---")
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try:
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# check if something was not mapped
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expanded = jsonld.expand(doc_json)
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print("JSON-LD expansion works")
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nquads = jsonld.normalize(doc_json, {'algorithm': 'URDNA2015', 'format': 'application/n-quads'})
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print(f"RFD graph {len(nquads.splitlines())} triplas.")
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print(nquads)
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except Exception as e:
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print(f"❌ Erro ao processar JSON-LD: {e}")

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