DESCRIPTION

Package: SARTools
Type: Package
Title: Statistical Analysis of RNA-Seq Tools
Version: 1.8.2
Date: 2025-10-09
Authors@R: c(
    person(given = "Hugo", family = "Varet", role = c("aut", "cre"), email = "hugo.varet@pasteur.fr"),
    person(given = "Marie-Agnès", family = "Dillies", role = c("aut"), email = "marie-agnes.dillies@pasteur.fr")
  )
Maintainer: Hugo Varet <hugo.varet@pasteur.fr>
Depends: R (>= 3.3.0),
	DESeq2 (>= 1.32.0),
	ashr (>= 2.2-54),
	edgeR (>= 3.34.0),
	ggplot2 (>= 3.3.0),
	kableExtra
Imports: genefilter (>= 1.44.0),
	GGally,
	ggrepel,
	ggdendro,
	graphics,
	grDevices,
	grid,
	gridExtra,
	limma,
	rlang,
	rmarkdown (>= 1.4),
	S4Vectors,
	scales,
	stats,
	SummarizedExperiment,
	utils
Suggests: knitr, optparse
biocViews: Software
VignetteBuilder: knitr, rmarkdown
Encoding: latin1
Description: Provide R tools and an environment for the statistical analysis of RNA-Seq projects: load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report.
License: GPL-2
RoxygenNote: 7.3.2